Locus 790

Sequence ID 2R_DroMel_CAF1
Location 3,763,460 – 3,763,567
Length 107
Max. P 0.684821
window1386

overview

Window 6

Location 3,763,460 – 3,763,567
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 73.27
Mean single sequence MFE -29.34
Consensus MFE -14.72
Energy contribution -16.20
Covariance contribution 1.48
Combinations/Pair 1.38
Mean z-score -1.76
Structure conservation index 0.50
SVM decision value 0.31
SVM RNA-class probability 0.684821
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3763460 107 - 20766785
CUAGGUUAAUAAGACAACGUAUAGAUGACGCUUUAGUGCAGUCUAUGCAACGAGUGUAGAAGGCAAGUACUGUCCGUGAUAGAUAGAUGGCGCUAUCAGAACGGUAA
....(((.....)))..(((...((((.((((....(((..(((((((.....)))))))..)))....(((((.......)))))..)))).))))...))).... ( -25.40)
>DroSec_CAF1 20025 107 - 1
CUAGGUUAAUAAGACAACGUGUAGGUGGCGCCUUUGAGCCGCGUAUACAACGAAUGUAGGCGCCAAGUACUGUCCCUGAUAGAUAGAUGGCGCUAUCUUGACGGUAA
.........(((((....(((((.(((((........))))).)))))..........(((((((..(((((((...))))).))..))))))).)))))....... ( -34.80)
>DroSim_CAF1 14340 107 - 1
CUAGGUUAAUAAAACAACGUAUAGGUGGCGCCUUCGAGCCGUGUAUACAACGAAUGUAGACGGCAAGUACUGUCACUGAUAGAUAGAUGGCGCUAUCAUGACGGUAA
.................(((...(((((((((.((..(((((.((((.......)))).))))).....(((((...)))))...)).)))))))))...))).... ( -36.20)
>DroEre_CAF1 20277 91 - 1
AUAGCUUAUAAAAACGAUGUAUAGGUGGCGCC-AUGUGCCAUGUGGAAAACGA-----------AAGUACUGUCGCUGAUA----GAGGGCGCCAGCAAAACAGUAA
.................(((...(.(((((((-.(.((.((.((((...((..-----------..))....)))))).))----.).))))))).)...))).... ( -24.90)
>DroYak_CAF1 13406 92 - 1
CUAGCUUAAAGAGACGGCGUAUAGGUGGCGCCCUUGUGCCGUGUAUAUAACGA-----------AACUACUAUCGCUGAUA----GAGGGCGCUGGCAAAACUGUAA
(((((.........((..(((((..((((((....))))))..)))))..)).-----------..((.(((((...))))----).))..)))))........... ( -25.40)
>consensus
CUAGGUUAAUAAGACAACGUAUAGGUGGCGCCUUUGUGCCGUGUAUACAACGA_UGUAG__G_CAAGUACUGUCCCUGAUAGAUAGAUGGCGCUAUCAAAACGGUAA
..................(((((.(((((((....))))))).)))))...................((((((...((((((..........))))))..)))))). (-14.72 = -16.20 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:27 2006