| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,331,628 – 1,331,748 |
| Length | 120 |
| Max. P | 0.584731 |
| Location | 1,331,628 – 1,331,748 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.03 |
| Mean single sequence MFE | -42.60 |
| Consensus MFE | -29.69 |
| Energy contribution | -31.50 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.584731 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1331628 120 + 20766785 CCGGGUAGCGGUUGCUGGCCAGGCCAAAAGUUUCGCCUGCCGCAAAUCUGGCUCGUAGAGCUCAUUUGCAGGCUGAAACGCACCUGGGCUGAUUUAUGUUGGGCAAAGUGCGGGCAUCAA ..((.((((....)))).))..(((....(((((((((((...((((..(((((...))))).)))))))))).)))))((((...(.(..((....))..).)...)))).)))..... ( -45.80) >DroSec_CAF1 50159 120 + 1 CCGGGUGGCGGUUGCUGGCCAGGUCAAAAGUUUCGCCUGCCGCAAAUCUGGCUCGUAGAGCUCAUUUGCAGGCUGAAACGCACCUGGGCUGAUUUAUGUUGGGCAAAGUGCGGCCAUCAA ...((((((.((.(((..((((((.....(((((((((((...((((..(((((...))))).)))))))))).)))))..))))))(((.(.......).)))..))))).)))))).. ( -46.80) >DroEre_CAF1 31811 99 + 1 ----------------G-----GCCAAAAGUUUCGCCAGCCGCAAAUCUGGCCCGUACAGCUCAUUUGCAGGCCCAAACGCACCUGGGCUGAUUUAUGUUGGCCAAAGUGCGGACAUCAA ----------------(-----(((....((...(((((........)))))....)).((......)).))))....(((((...(((..((....))..)))...)))))........ ( -35.00) >DroYak_CAF1 17121 115 + 1 CCAGGUAGCGGCUGCCG-----GCCAAAAGUUUCGUCUGCCGCAAAUCUGGCCCGUAGAGCUCAUUUGCAGGCUGAAACGCACCUGGGCUGAUUUAUGUUGGCCAAAGUGCGGGCAUCAA ...(((((...))))).-----(((....((((((...(((((((((..(((.......))).)))))).)))))))))((((...(((..((....))..)))...)))).)))..... ( -42.80) >consensus CCGGGUAGCGGUUGCUG_____GCCAAAAGUUUCGCCUGCCGCAAAUCUGGCCCGUAGAGCUCAUUUGCAGGCUGAAACGCACCUGGGCUGAUUUAUGUUGGCCAAAGUGCGGGCAUCAA ......................(((....((((((...(((((((((..(((((...))))).)))))).)))))))))((((...(((..((....))..)))...)))).)))..... (-29.69 = -31.50 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:06 2006