| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,762,768 – 3,762,862 |
| Length | 94 |
| Max. P | 0.972590 |
| Location | 3,762,768 – 3,762,862 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 90.63 |
| Mean single sequence MFE | -25.83 |
| Consensus MFE | -22.05 |
| Energy contribution | -22.17 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.972590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3762768 94 - 20766785 AAGG------AGCCAAAAAAGGACGAGCAACCAUCAUUCCGGAAGGAAGAAAUGAAGCCAAGCGCAACAGUUGCAUGAAGUGCGGGCACUUCAAAUUAAU ....------.(((......)).)..((((((((..((((....))))...)))..((.....))....))))).(((((((....)))))))....... ( -25.80) >DroSec_CAF1 19257 92 - 1 AAGG------AGCCAA--AAGGACGAGCAACCAUCAUUCCGGAAGGAAGAAAUGAAGCCAAGCGCAACAGUUGCAUGAAGUGCGGGCACUUCAAAUUAAU ....------.(((..--..)).)..((((((((..((((....))))...)))..((.....))....))))).(((((((....)))))))....... ( -25.60) >DroSim_CAF1 13562 92 - 1 AAGG------AGCCAA--AAGGACGAGCAACCAUCAUUCCGGAAGGAAGAAAUGAAGCCAAGCGCAACAGUUGCAUGAAGUGCGGGCACUUCAAAUUAAU ....------.(((..--..)).)..((((((((..((((....))))...)))..((.....))....))))).(((((((....)))))))....... ( -25.60) >DroEre_CAF1 19573 92 - 1 AAGG------AGCCAA--AAGGAUAGGCAACCAUCAUUCCGGAAGGAAGAAAUGAAGCCAAGCGCAACAGUUGCAUGAAGUGCGGGCACUUCAAAUUAAU .(((------.(((..--.......(((...(((..((((....))))...)))..)))..((((..((......))..)))).))).)))......... ( -25.60) >DroYak_CAF1 12716 92 - 1 AAGG------ACCCAA--AAGGACGAGUAACCAUCAUUCCGGAAGGAAGAAAUGAAGCCAAGCGCAACAGUUGCGUGAAGUGUGGGUACUUCAAAUCAAU (((.------(((((.--.............(((..((((....))))...)))..((...(((((.....)))))...)).))))).)))......... ( -23.00) >DroAna_CAF1 18678 97 - 1 AAGGUAGGCUGGCCGA--AGGUAGGAGA-GACAUCCUUCCGGAAGGAAGAAAUGAAGCCAAGCGCAACAGUUGCAUGAAGUGCGGGCACUUCAAAUUAAU .......(((((((..--..).......-..(((.(((((....)))))..)))..))).)))(((.....))).(((((((....)))))))....... ( -29.40) >consensus AAGG______AGCCAA__AAGGACGAGCAACCAUCAUUCCGGAAGGAAGAAAUGAAGCCAAGCGCAACAGUUGCAUGAAGUGCGGGCACUUCAAAUUAAU ..........................((((((((..((((....))))...)))..((.....))....))))).(((((((....)))))))....... (-22.05 = -22.17 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:26 2006