| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,748,330 – 3,748,490 |
| Length | 160 |
| Max. P | 0.979873 |
| Location | 3,748,330 – 3,748,450 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 98.33 |
| Mean single sequence MFE | -25.34 |
| Consensus MFE | -24.08 |
| Energy contribution | -24.08 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.809494 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3748330 120 + 20766785 AAAUCGAGCCACCGCGAGUCAUAUCAAUUCAUAAAUGCAUAUUAAUUCCGAUAGAGGCUAAAAUUAAAACAGGAGUCGCUUUGGAAUAAUGUGAGAAAAAAACUUUCUCACGAUCACCUU ..(((...(((..((((.((................((.((((......))))...))..............)).))))..)))......((((((((.....)))))))))))...... ( -24.21) >DroSim_CAF1 11218 120 + 1 AAAUCGAGCCAACGCGAGUCAUAUCAAUUCAUAAAUGCAUAUUAAUUCCGAUAGAGGCUAAAAUUAAAACAGGAGUCGCCGUGGAAUAAUGUGAGAAAAAAACUUUCUCACGAUCACCUU ..(((...(((..((((.((................((.((((......))))...))..............)).))))..)))......((((((((.....)))))))))))...... ( -24.01) >DroYak_CAF1 10867 120 + 1 AAAUCGAGCCACCGCGAGUCAUAUCAAUUCAUAAAUGCAUAUUAAUUCCGAUAGAGGCUAAAAUUAAAACAGGAGUCGCUGUGGAAUAAUGUGAGAAAAAAACUUUCUCACGAUCACCUU ..(((...((((.((((.((................((.((((......))))...))..............)).)))).))))......((((((((.....)))))))))))...... ( -27.81) >consensus AAAUCGAGCCACCGCGAGUCAUAUCAAUUCAUAAAUGCAUAUUAAUUCCGAUAGAGGCUAAAAUUAAAACAGGAGUCGCUGUGGAAUAAUGUGAGAAAAAAACUUUCUCACGAUCACCUU ..(((...(((..((((.((................((.((((......))))...))..............)).))))..)))......((((((((.....)))))))))))...... (-24.08 = -24.08 + 0.00)
| Location | 3,748,370 – 3,748,490 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 98.33 |
| Mean single sequence MFE | -37.18 |
| Consensus MFE | -35.54 |
| Energy contribution | -35.98 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.03 |
| Mean z-score | -3.04 |
| Structure conservation index | 0.96 |
| SVM decision value | 1.85 |
| SVM RNA-class probability | 0.979873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3748370 120 + 20766785 AUUAAUUCCGAUAGAGGCUAAAAUUAAAACAGGAGUCGCUUUGGAAUAAUGUGAGAAAAAAACUUUCUCACGAUCACCUUGUUGUCGCGCAGACGGCGUUUGGUGGAAAUCCACGUGCAA ....(((((((.((.((((..............)))).)))))))))..(((((((((.....))))))))).(((((.(((((((.....)))))))...))))).............. ( -34.64) >DroSim_CAF1 11258 120 + 1 AUUAAUUCCGAUAGAGGCUAAAAUUAAAACAGGAGUCGCCGUGGAAUAAUGUGAGAAAAAAACUUUCUCACGAUCACCUUGAUGUCGCGCAGACGGCGUUUGGUGGAAAUCCACGUGCAA ....(((((......................))))).((((((((....(((((((((.....))))))))).(((((..(((((((......))))))).)))))...)))))).)).. ( -39.55) >DroYak_CAF1 10907 120 + 1 AUUAAUUCCGAUAGAGGCUAAAAUUAAAACAGGAGUCGCUGUGGAAUAAUGUGAGAAAAAAACUUUCUCACGAUCACCUUGAUGUCGCGCAGACGGCGUUUGGUGGAAAUCCACGUGCAA ....(((((......................))))).((((((((....(((((((((.....))))))))).(((((..(((((((......))))))).)))))...)))))).)).. ( -37.35) >consensus AUUAAUUCCGAUAGAGGCUAAAAUUAAAACAGGAGUCGCUGUGGAAUAAUGUGAGAAAAAAACUUUCUCACGAUCACCUUGAUGUCGCGCAGACGGCGUUUGGUGGAAAUCCACGUGCAA ....(((((......................))))).((((((((....(((((((((.....))))))))).(((((..(((((((......))))))).)))))...)))))).)).. (-35.54 = -35.98 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:20 2006