| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,746,740 – 3,746,976 |
| Length | 236 |
| Max. P | 0.799631 |
| Location | 3,746,740 – 3,746,860 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.54 |
| Mean single sequence MFE | -38.57 |
| Consensus MFE | -35.91 |
| Energy contribution | -35.70 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.578556 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3746740 120 + 20766785 GACGAGGGGAAACCUGAGUGAAGUGUGCGGUCUGCGGGGCAUUAGAAGUCGUGACGGGCCGCCCAACUAUUUGAUUGUUUUUCUUCCUGCUGUGGGAGAUUUCAUUUUUAUGAAUUUGAU ((((((((....)))(((((...((.((((((((((.(((.......))).)).)))))))).))..)))))..)))))..((((((......)))))).(((((....)))))...... ( -38.90) >DroSim_CAF1 9565 118 + 1 GACGAGGGGAAACCUGAGUGAAGUGUGCGGUCUGCGGGGCAUUAGAAGUCGUGACGGGCCGCCCAACUAUUUGAUUGUU--UCUUCCUGCUGUGGGAGAUUUCAUUUUUAUGAAUUUGAU ((((((((....)))(((((...((.((((((((((.(((.......))).)).)))))))).))..)))))..)))))--((((((......)))))).(((((....)))))...... ( -38.90) >DroYak_CAF1 9314 117 + 1 AGCGAGGGGAAAUCCGAGUGAAGUGUGCGGUCUGCGGGGCAUUAGAAGUCGUGACGGGCCGCCCAACUAUUUGAUUGUUU---UUCCUGCUGUGGGAGAUUUCAUUUUUAUGAAUUUGAU (((.(((..((((.((((((...((.((((((((((.(((.......))).)).)))))))).))..))))))...))))---..))))))......((.(((((....))))).))... ( -37.90) >consensus GACGAGGGGAAACCUGAGUGAAGUGUGCGGUCUGCGGGGCAUUAGAAGUCGUGACGGGCCGCCCAACUAUUUGAUUGUUU_UCUUCCUGCUGUGGGAGAUUUCAUUUUUAUGAAUUUGAU ((((((((....)))(((((...((.((((((((((.(((.......))).)).)))))))).))..)))))..)))))..((((((......)))))).(((((....)))))...... (-35.91 = -35.70 + -0.21)
| Location | 3,746,860 – 3,746,976 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.55 |
| Mean single sequence MFE | -29.40 |
| Consensus MFE | -22.01 |
| Energy contribution | -21.57 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.799631 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3746860 116 + 20766785 AAAUGGCCAGCCAGGAGUCGGGCUAAUAACUGGAAAGUUCUUUCUGACAGACUCCAAAAAGGGGGAAAAGUGUU-UUCACCCAAAAAAAACAAAAGAUGCAAUAAUUUAUAUGCUG---A .......((((..((((((...(.((.((((....)))).))...)...)))))).....((((((((....))-))).)))..............................))))---. ( -26.70) >DroSim_CAF1 9683 117 + 1 AAAUGGCCAGCCAGGAGUCGGGCUAAUAACUGGAAAGUUCUUUCUGACAGACUCCAAAAAGGGGGAUAUGCAUUCUUCACCCAAAAAAAGCAAAUGAUGCCAUAAUUUAUAUGCUG---A ...(((....)))((((((...(.((.((((....)))).))...)...)))))).....(((.((..........)).)))......((((.((((.........)))).)))).---. ( -26.60) >DroYak_CAF1 9431 114 + 1 AAAUGGCCAGCCAGGAGUCGGGCUAAUAACUGGAAAGUUCUUUCUGCCAGACUCCAAAAAGGGGAAAAAGUAUUUUUCCCCCAAAAAA------CAAUUCUAUAAUUUAUAUGUUGUCGA ...(((....)))((((((.(((.((.((((....)))).))...))).)))))).....((((((((.....)))))))).......------....((.(((((......))))).)) ( -34.90) >consensus AAAUGGCCAGCCAGGAGUCGGGCUAAUAACUGGAAAGUUCUUUCUGACAGACUCCAAAAAGGGGGAAAAGUAUU_UUCACCCAAAAAAA_CAAAAGAUGCAAUAAUUUAUAUGCUG___A .......((((..((((((((........))(((((....)))))....)))))).....((((((.........))).)))..............................)))).... (-22.01 = -21.57 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:16 2006