| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,743,709 – 3,743,869 |
| Length | 160 |
| Max. P | 0.941495 |
| Location | 3,743,709 – 3,743,829 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.61 |
| Mean single sequence MFE | -37.30 |
| Consensus MFE | -34.02 |
| Energy contribution | -34.47 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.941495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3743709 120 - 20766785 CGAUUUCGACUGCUCCAACGGCUAUAGCGACAGCUAUGGCUCCAAUGGACGCAUGUCCAAUCCCAAUGGAUUGUCAAAAGCAGAACUUAGAAAGGUGAGUUCGCUCUUUUGCGAUGAAAU ..(((((((((((((((..(((((((((....)))))))))....)))).))).)))((((((....)))))).((((((..(((((((......)))))))...))))))....))))) ( -43.00) >DroSim_CAF1 6473 120 - 1 CGACUUCGACUGCUCCAACGGCUAUAGCGACAGCUAUGGCUCCAAUGGACGCAUGUCCAAUCCCAAUGGAUUGUCAAAAGCAGAACUGAGAAAGGUGAGUUCGCUAUUUUGCGAUGAUAU .......((((((((((..(((((((((....)))))))))....)))).))).)))((((((....))))))(((...((((((((.....))(((....)))..))))))..)))... ( -38.40) >DroYak_CAF1 6365 110 - 1 CGACUUCGACUGCUCCAACGGCUACAGCGAUAGCUAUGGCUCCAGUGGACGCAUGUCCAAUCCCAAUGGAUUAUCAAAAGCAGAACUGAGAAAGGUGAGUUUGCUAUUAC---------- .((....((((((((((..(((((.(((....))).)))))....)))).))).))).(((((....))))).))...((((((.((.(......).)))))))).....---------- ( -30.50) >consensus CGACUUCGACUGCUCCAACGGCUAUAGCGACAGCUAUGGCUCCAAUGGACGCAUGUCCAAUCCCAAUGGAUUGUCAAAAGCAGAACUGAGAAAGGUGAGUUCGCUAUUUUGCGAUGA_AU .((....((((((((((..(((((((((....)))))))))....)))).))).)))((((((....))))))))...(((.(((((.(......).))))))))............... (-34.02 = -34.47 + 0.45)
| Location | 3,743,749 – 3,743,869 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.22 |
| Mean single sequence MFE | -30.81 |
| Consensus MFE | -30.44 |
| Energy contribution | -31.11 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.99 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.866312 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3743749 120 - 20766785 GUUACAAAAUGGAUUACAAAAACGAUAUUAAUUCCGACGACGAUUUCGACUGCUCCAACGGCUAUAGCGACAGCUAUGGCUCCAAUGGACGCAUGUCCAAUCCCAAUGGAUUGUCAAAAG .........((((...................))))..(((......((((((((((..(((((((((....)))))))))....)))).))).))).(((((....))))))))..... ( -33.01) >DroSim_CAF1 6513 120 - 1 GUUACAAAAUGGAUUACAAAAACGAUAUUAAUUCCGACGACGACUUCGACUGCUCCAACGGCUAUAGCGACAGCUAUGGCUCCAAUGGACGCAUGUCCAAUCCCAAUGGAUUGUCAAAAG .........((((...................))))..(((......((((((((((..(((((((((....)))))))))....)))).))).))).(((((....))))))))..... ( -33.01) >DroYak_CAF1 6395 120 - 1 GUUACAAAAUGGAUUACAAAAACGAUAUUAAUUCCGACGACGACUUCGACUGCUCCAACGGCUACAGCGAUAGCUAUGGCUCCAGUGGACGCAUGUCCAAUCCCAAUGGAUUAUCAAAAG .........((((...................)))).....((....((((((((((..(((((.(((....))).)))))....)))).))).))).(((((....))))).))..... ( -26.41) >consensus GUUACAAAAUGGAUUACAAAAACGAUAUUAAUUCCGACGACGACUUCGACUGCUCCAACGGCUAUAGCGACAGCUAUGGCUCCAAUGGACGCAUGUCCAAUCCCAAUGGAUUGUCAAAAG .........((((...................))))..(((......((((((((((..(((((((((....)))))))))....)))).))).))).(((((....))))))))..... (-30.44 = -31.11 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:11 2006