| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,742,810 – 3,743,050 |
| Length | 240 |
| Max. P | 0.938590 |
| Location | 3,742,810 – 3,742,930 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 97.22 |
| Mean single sequence MFE | -29.26 |
| Consensus MFE | -29.59 |
| Energy contribution | -29.59 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.02 |
| Structure conservation index | 1.01 |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.938590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3742810 120 + 20766785 UCCCUUUCUCGCCGCUGGGACUGCAUAUUUUAGCAAAAGGUUCCCACGCAGGUCGCUCGCCAGCCCCGCCCCCUCAACCUCCCCCGCUCCCCUGUCUGAACCUUUUGUUUACUUUUGCUU ((((............))))..(((......((((((((((((....(((((..(((....)))...((................))...)))))..))))))))))))......))).. ( -29.59) >DroSim_CAF1 5496 120 + 1 UCCCUUUCUGGCCGCUGGGACUGCAUAUUUUAGCAAAAGGUUCCCACGCAGGUCGCUCGCCAGCCCCGCCCCCUCAACCUCCCCCGCUCCCCUGUCUGAACCUUUUGUUUACUUUUGCUU ((((............))))..(((......((((((((((((....(((((..(((....)))...((................))...)))))..))))))))))))......))).. ( -29.59) >DroYak_CAF1 5423 117 + 1 UCCCUUUCUCGCCGCUGGGACUGCAUA---UAGCAAAAGGUUCCCACGCAGGUCGCUCGCCAGCCCCGCCCCCUCGACCUCCCCCGCUCCCCUGUCUGAACCUUUUGUUUACUUUUGCUU ((((............))))..(((..---.((((((((((((....(.((((((...((.......)).....)))))).)...((......))..))))))))))))......))).. ( -28.60) >consensus UCCCUUUCUCGCCGCUGGGACUGCAUAUUUUAGCAAAAGGUUCCCACGCAGGUCGCUCGCCAGCCCCGCCCCCUCAACCUCCCCCGCUCCCCUGUCUGAACCUUUUGUUUACUUUUGCUU ((((............))))..(((......((((((((((((....(((((..(((....)))...((................))...)))))..))))))))))))......))).. (-29.59 = -29.59 + -0.00)
| Location | 3,742,930 – 3,743,050 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 99.44 |
| Mean single sequence MFE | -27.87 |
| Consensus MFE | -27.00 |
| Energy contribution | -27.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.882218 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3742930 120 + 20766785 UUUUCCCUCAAUGUCUUUCUUAUUUGAUUUUUGGUCCGGCUCUCCUGCAGAAUUCUGCGGCGGCAAAUUUUACUUGAUUUCUGCUUUGUAGUUUCUCACAGCAGGAUCACUCCUUGGAAA .(((((.((((............))))....((((((.(((....((.((((..(((((((((.(((((......))))))))))..)))).)))))).))).))))))......))))) ( -28.30) >DroSim_CAF1 5616 120 + 1 UUUUCCCUCAAUGUCUUUCUUAUUUGAUUUUUGGUCCGGCUCUCCUGCAGAAUUCUGCGGCGGCAAAUUUUACUUGAUUUCUGCUUUGUAGUUUCUCACAGCAGGAUCACUCCUUGGAAA .(((((.((((............))))....((((((.(((....((.((((..(((((((((.(((((......))))))))))..)))).)))))).))).))))))......))))) ( -28.30) >DroYak_CAF1 5540 120 + 1 UUUUCCCUCAAUGUCUUUCUUAUUUGAUUUUUGGUCCGACUCUCCUGCAGAAUUCUGCGGCGGCAAAUUUUACUUGAUUUCUGCUUUGUAGUUUCUCACAGCAGGAUCACUCCUUGGAAA .(((((.((((.(((..........)))..))))........((((((((((..(((((((((.(((((......))))))))))..)))).))))....)))))).........))))) ( -27.00) >consensus UUUUCCCUCAAUGUCUUUCUUAUUUGAUUUUUGGUCCGGCUCUCCUGCAGAAUUCUGCGGCGGCAAAUUUUACUUGAUUUCUGCUUUGUAGUUUCUCACAGCAGGAUCACUCCUUGGAAA .(((((.((((.(((..........)))..))))........((((((((((..(((((((((.(((((......))))))))))..)))).))))....)))))).........))))) (-27.00 = -27.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:08 2006