Locus 773

Sequence ID 2R_DroMel_CAF1
Location 3,736,258 – 3,736,378
Length 120
Max. P 0.938289
window1349

overview

Window 9

Location 3,736,258 – 3,736,378
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.50
Mean single sequence MFE -45.11
Consensus MFE -27.50
Energy contribution -27.95
Covariance contribution 0.45
Combinations/Pair 1.31
Mean z-score -2.25
Structure conservation index 0.61
SVM decision value 1.27
SVM RNA-class probability 0.938289
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3736258 120 + 20766785
ACCGCACUUUUGUGACAACACCAAGGUACCGACCAGGGAUCCCUGCACGUUAAUGAUAUGCCAGAAUGCGGGAACCUGUCACAUUAUCAAGGGCGUAGCACUCUGCAAUUGCACGGACCA
..(((.((((((((((........(((....))).(((.((((.(((......((......))...))))))).))))))))).....))))))).....((.(((....))).)).... ( -30.90)
>DroPse_CAF1 13291 120 + 1
GCCGCAAUUCUGCGAGGCAUCGCAGGUGCCCGUCAGGAAUCCCUGCACGGGCAUCAUUUGCCAGAACGCCGGCACCUGUCACGUCAUCAAGGGCGUGGCCAUGUGCAACUGCACGGAUCA
((((...((((((((....)))).(((((((((((((....)))).))))))))).......))))...)))).((.((((((((......))))))))...((((....)))))).... ( -57.20)
>DroGri_CAF1 14152 120 + 1
ACCACGCUUCUGUGAUGUCUCUCAGCUGCCGUCGCGCAAUCCCUGCACGGGCAUCAUUUGCCAGAACUCGGGCACCUGCCACGUAAUCAAGGGCGUUGCCAUGUGCAACUGCACAGAUCA
...(((((..((..((((....(((.((((..((.(((.....))).))((((.....))))........)))).)))..))))...))..))))).....(((((....)))))..... ( -38.60)
>DroWil_CAF1 14958 120 + 1
GCCACGUUUCUGUGAUGCCUCCGAGGUGCCAUCGCGUAAUCCCUGCACUGGCAUCAUAUGCCAGAAUAGUGGCACUUGUCACGUCAUCAAGGGCGUGGCUAUGUGCAAUUGUACAGAUCA
((((((((..(((((((......(((((((((.(((.......))).(((((((...)))))))....)))))))))....))))).))..))))))))..(((((....)))))..... ( -49.20)
>DroAna_CAF1 13327 120 + 1
ACCGCACUUCUGCGACUCCGCCAAGGUGCCCCUGCGAGAUCCCUGCACCGGAAUCAUCUGCCAAAACUCUGGAACCUGUCACGUCAUCAAAGGUGUGGCGUUGUGCAACUGCACGGAUCA
...((((((..(((....)))..))))))........(((((.(((((((((...............))))).....(((((..(......)..)))))..........)))).))))). ( -37.56)
>DroPer_CAF1 13010 120 + 1
GCCGCAAUUCUGCGAGGCAUCGCAGGUGCCCGUCAGGAAUCCCUGCACGGGCAUCAUUUGCCAGAACGCCGGCACCUGUCACGUCAUCAAGGGCGUGGCCAUGUGCAACUGCACGGAUCA
((((...((((((((....)))).(((((((((((((....)))).))))))))).......))))...)))).((.((((((((......))))))))...((((....)))))).... ( -57.20)
>consensus
ACCGCACUUCUGCGACGCCUCCCAGGUGCCCGCCAGGAAUCCCUGCACGGGCAUCAUUUGCCAGAACGCCGGCACCUGUCACGUCAUCAAGGGCGUGGCCAUGUGCAACUGCACGGAUCA
..((((....)))).........(((((((.....(......)......((((.....))))........)))))))((((((((......))))))))..(((((....)))))..... (-27.50 = -27.95 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:53 2006