Locus 771

Sequence ID 2R_DroMel_CAF1
Location 3,727,857 – 3,727,964
Length 107
Max. P 0.828784
window1346

overview

Window 6

Location 3,727,857 – 3,727,964
Length 107
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 75.65
Mean single sequence MFE -35.15
Consensus MFE -22.08
Energy contribution -23.78
Covariance contribution 1.70
Combinations/Pair 1.38
Mean z-score -1.55
Structure conservation index 0.63
SVM decision value 0.71
SVM RNA-class probability 0.828784
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3727857 107 + 20766785
U-------ACAUUCU--UUUAUAGAGAGCAUUCAAAGCAUGAAGAUGUUUUAUGCGGACGCCCAGACCGGCUCAAACACCUGUGCCGAGUGGGCUUAUCGCGGUGGCUGCCAGCAG
.-------....(((--(.....))))((....(((((((....)))))))..((((..(((((...((((.((......)).))))..)))))...))))(((....))).)).. ( -31.80)
>DroVir_CAF1 6019 106 + 1
U-------AUUUUGAAAUUUGUAGAAAGCAUUCAGAGCAUGAAAAUGUUCUAUGCAGAUGCCCAAACGGGAACCAACUCCUGCGCUGG---UCCCAUGCGUGGCGGCUGCGAGCAG
.-------...................((....(((((((....))))))).(((((.((((.....((((......))))((((((.---...)).)))))))).))))).)).. ( -33.80)
>DroPse_CAF1 5234 109 + 1
UCGUGACUGUUUU----CUUCCAGAGAGCAUUCAGAGCAUGAAAAUGUUCUAUGCGGAUGCCCAGACGGGCACCAACACCUGUGCCGG---ACCCCUGCGCGGUGGCUGUGAGCAU
....((.((((((----(.....))))))).))(((((((....)))))))((((((.(((((....)))))))..((((.((((.((---...)).)))))))).......)))) ( -44.40)
>DroMoj_CAF1 6592 106 + 1
U-------UCUUUUUAAUAUACAGAGAGUAUUCAGAGCAUGAAAAUGUUCUACGCUGAUGCUCAAACGGGCACCAAUACCUGUGCUGG---GCCCCUGCGCGGUGGCUGCGAGCAG
.-------.............(((...((....(((((((....))))))))).))).(((((....((((.(((.((....)).)))---))))....((((...))))))))). ( -33.40)
>DroAna_CAF1 5323 98 + 1
U-------ACUU--------UCAGAGACCAUUCAGAGCAUGAAAAUGUUCUAUGCGGAUGCCCAAACUGGCACUAAUUCGUGCGCAGG---ACCACUACGUGGUGGAUGCGAACAU
.-------....--------...(((.((.(..(((((((....)))))))..).)).((((......))))....)))((.((((..---.(((((....))))).)))).)).. ( -28.70)
>DroPer_CAF1 4958 102 + 1
U-------AUUUU----CUUCCAGAGAGCAUUCAGAGCAUGAAGAUGUUCUAUGCGGAUGCCCAGACGGGCACCAACACCUGUGCCGG---ACCCCUGCGCGGUGGCUGUGAGCAU
.-------.....----((..(((...((((..(((((((....)))))))))))((.(((((....)))))))..((((.((((.((---...)).)))))))).)))..))... ( -38.80)
>consensus
U_______ACUUU____UUUACAGAGAGCAUUCAGAGCAUGAAAAUGUUCUAUGCGGAUGCCCAAACGGGCACCAACACCUGUGCCGG___ACCCCUGCGCGGUGGCUGCGAGCAG
...........................((....(((((((....))))))).(((((.(((((....)))))....((((.((((.((......)).)))))))).))))).)).. (-22.08 = -23.78 +   1.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:49 2006