Locus 767

Sequence ID 2R_DroMel_CAF1
Location 3,712,954 – 3,713,092
Length 138
Max. P 0.705614
window1338 window1339

overview

Window 8

Location 3,712,954 – 3,713,058
Length 104
Sequences 3
Columns 110
Reading direction forward
Mean pairwise identity 77.99
Mean single sequence MFE -26.54
Consensus MFE -19.16
Energy contribution -19.49
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.49
Structure conservation index 0.72
SVM decision value 0.36
SVM RNA-class probability 0.705614
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3712954 104 + 20766785
CAGAUGCUGACCGGCACCGCAGCGAGGGAACAACACUCAACACCCCCCCCCCCCCCAUUCCCCACAGGAUGCACCUCCGGCUUCCUGCUUCCCGCGGUCUC------CAC
.....(((....)))(((((...(.(((((...........................)))))).(((((.((.......)).)))))......)))))...------... ( -23.93)
>DroSec_CAF1 36589 89 + 1
CAGAUGCUGACCUGCACCGCAGCGAGGGAACAC----------CCCCUCACCCCC-----CACACAGGAUGCAGCUCCGGCUUCCUGCUUCCCGCGGACUC------CAC
....(((......)))((((...(((((.....----------.)))))......-----....(((((.((.......)).)))))......))))....------... ( -28.30)
>DroSim_CAF1 13894 95 + 1
CAGAUGCUGACCGGCACCGCAGCGAGGGAACAA----------CCCCCUCUUUCU-----CCCACAGGAUGCAGCUCCGGCUUCCUGCUUCCCUCGGUCUCCACCUCCAC
.((.((..(((((((......))(((((.....----------..))))).....-----....(((((.((.......)).))))).......)))))..)).)).... ( -27.40)
>consensus
CAGAUGCUGACCGGCACCGCAGCGAGGGAACAA__________CCCCCCCCCCCC_____CCCACAGGAUGCAGCUCCGGCUUCCUGCUUCCCGCGGUCUC______CAC
....(((......)))((((.(.(((((................))).................(((((.((.......)).)))))..))).))))............. (-19.16 = -19.49 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 3,712,986 – 3,713,092
Length 106
Sequences 3
Columns 112
Reading direction forward
Mean pairwise identity 77.14
Mean single sequence MFE -23.57
Consensus MFE -19.55
Energy contribution -19.67
Covariance contribution 0.11
Combinations/Pair 1.06
Mean z-score -1.00
Structure conservation index 0.83
SVM decision value 0.20
SVM RNA-class probability 0.632142
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3712986 106 + 20766785
ACACUCAACACCCCCCCCCCCCCCAUUCCCCACAGGAUGCACCUCCGGCUUCCUGCUUCCCGCGGUCUC------CACCGUUUGCUUUUGGCCAUGGUCUGCCGGAAAUCUG
.......................(((((......)))))....((((((..((.(((....(((((...------.)))))........)))...))...))))))...... ( -22.90)
>DroSec_CAF1 36621 91 + 1
C----------CCCCUCACCCCC-----CACACAGGAUGCAGCUCCGGCUUCCUGCUUCCCGCGGACUC------CACAGUUUGCUCUUGGCCAUGGCCUGCCGGAAAUCUG
.----------............-----......((((.....((((((............(((((((.------...)))))))....(((....))).)))))).)))). ( -25.30)
>DroSim_CAF1 13926 97 + 1
A----------CCCCCUCUUUCU-----CCCACAGGAUGCAGCUCCGGCUUCCUGCUUCCCUCGGUCUCCACCUCCACCGUUUGCUCUUGGCCAUGGCCUGCCGGAAAUCUG
.----------...........(-----((....)))..(((.((((((.....((......((((..........))))...))....(((....))).))))))...))) ( -22.50)
>consensus
A__________CCCCCCCCCCCC_____CCCACAGGAUGCAGCUCCGGCUUCCUGCUUCCCGCGGUCUC______CACCGUUUGCUCUUGGCCAUGGCCUGCCGGAAAUCUG
..................................((((.....((((((...((((.....))))........................(((....))).)))))).)))). (-19.55 = -19.67 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:43 2006