| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,677,769 – 3,677,873 |
| Length | 104 |
| Max. P | 0.945412 |
| Location | 3,677,769 – 3,677,873 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.00 |
| Mean single sequence MFE | -32.36 |
| Consensus MFE | -20.62 |
| Energy contribution | -22.06 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.945412 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3677769 104 - 20766785 CACAAUGCCUGUGGAAUCAGCUUGCAUCUGCCGCGCAGAAGCAAGAACCAGGU-UAUCCUCUUAGCUCC-GCAAAGAGCUCAGAGCGCAAGGAUGGAGAAUCAUCA-------------- ......(((((.(.......(((((.(((((...))))).)))))..))))))-....((((.(((((.-.....))))).))))(....)((((......)))).-------------- ( -33.70) >DroSim_CAF1 10032 116 - 1 CAUAAUAGAUGUAAAAUCAGCUUGCAUCUGCCGCGCAGAAGCAAGAACCAGGU-UUUCCUCUUAGCUCC-ACAAAGAGCUCAGAGCGCAAGGAUGGAGAAUCAUCAUUCUUAAGUUAA-- .......(((..........(((((.(((((...))))).))))).....(((-((((((((.(((((.-.....))))).))).(....)...))))))))))).............-- ( -34.10) >DroEre_CAF1 8978 116 - 1 CACAAUAGCUGUAUAAUCAGCUUGCAUCUGCGGCGCAGAAGCAAGAACCAGGU-UUUCCUCUUAGCUAC-AAAAAGAGCUCAGAGCGCAAGGAUGGAGAAUCAUCAUAAUGAAGCUAU-- ....((((((.(((......(((((.(((((...))))).))))).....(((-((((((((.((((..-......)))).))).(....)...))))))))......))).))))))-- ( -35.90) >DroYak_CAF1 6761 116 - 1 AACAAUAGACGUAGAAUCAGCUUGCAUCUGCGGCGCAGAAGCAAGAACCAGGU-UUUCCUCUUAGAUAC-GAAAAGACCUCAGAGCGCAAGGAUGGAGAAUCAUCAUAUUUAAGUUAU-- .......(((.((((.....(((((.(((((...))))).))))).....(((-((((((((.((....-........)).))).(....)...))))))))......)))).)))..-- ( -26.20) >DroAna_CAF1 3697 119 - 1 CUUG-AAUUUCUUAAAUCAGCUUGCCUCUGCCGCGCAGAAACAAGUACCAAGAGAUUCGUCUUUGCUCUUAAAAAGAACUCGGAGCGCAAGGACGGAGAAUCAUCACUUAUAAUCGAAGG ((((-((((((((......(((((..(((((...)))))..)))))...)))))))))((((((((.(((.....(....).))).)))))))).)))...................... ( -31.90) >consensus CACAAUAGAUGUAAAAUCAGCUUGCAUCUGCCGCGCAGAAGCAAGAACCAGGU_UUUCCUCUUAGCUCC_AAAAAGAGCUCAGAGCGCAAGGAUGGAGAAUCAUCAUAUUUAAGCUAA__ ................((..(((((.(((((...))))).)))))..(((........((((.(((((.......))))).))))(....)..))).))..................... (-20.62 = -22.06 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:26 2006