| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,328,999 – 1,329,228 |
| Length | 229 |
| Max. P | 0.910862 |
| Location | 1,328,999 – 1,329,114 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 66.53 |
| Mean single sequence MFE | -49.15 |
| Consensus MFE | -22.90 |
| Energy contribution | -25.15 |
| Covariance contribution | 2.25 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559335 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1328999 115 - 20766785 UGGUGCAGGUGGGUGGGACAGGUGGGUGAGCAUUGGCAGCCAUGGCUCCGCUUAUGCUGCGCAAAUAGCAACGCCGCC---CGCUCCGCCCGCUU--AGUGCUUCCAACGCCCCGACGGC (((.((((((((((((....((((((((.((....(((((...(((...)))...)))))((.....))...))))))---))))))))))))).--..)))..)))..(((.....))) ( -52.40) >DroSec_CAF1 47513 100 - 1 UGGUGCAGGUGGGUGGCGCAGGUGGGUGGGCAUUGGCAG-----------CUUAUGCUGCGCAAAUAGCAGCGCCGCCAGCCACUCCGCCCGCUC--CGUC-------CGCCCCGACGGC .((.((.((((((((((...(((((((..((.(((((((-----------(....))))).)))...)).)).))))).))))).))))).)).)--)...-------.(((.....))) ( -51.20) >DroEre_CAF1 28619 114 - 1 UGCUGCAAGUGGGUGGGGCAGGUGGG-GGGCACUGGCACCCAAGGCUCCGCUUAUGCUGCGCAAAUAGCAGCGCCGCCAC-CCCUCCACCCCCUGCACCCGCUC-C---ACCCCCAACGC ........((((((((((((((((((-(((...((((.....((((...))))..(((((.......)))))...)))).-)))))))))...))).))))).)-)---))......... ( -53.70) >DroYak_CAF1 14621 100 - 1 ----------GGGUGGGGCAGGUUGG-U------GUUAGCAAUGGCUCCGCUUAUGCUGCGCAAAUAGCACCGACGCCAC-C--ACCACCCCCCGCCAUCGCUUUCAACGAUCCGACGGC ----------((((((((..((((((-(------((((......((.(.((....)).).))...)))))))))).)..)-)--.))))))...(((.(((..((....))..))).))) ( -39.30) >consensus UGGUGCAGGUGGGUGGGGCAGGUGGG_GGGCAUUGGCAGCCAUGGCUCCGCUUAUGCUGCGCAAAUAGCAGCGCCGCCAC_C_CUCCACCCCCUG__AGCGCUU_C__CGCCCCGACGGC .......(((((((((....(((((..........(((((...(((...)))...)))))((.....))....))))).......))))))))).......................... (-22.90 = -25.15 + 2.25)
| Location | 1,329,114 – 1,329,228 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 90.16 |
| Mean single sequence MFE | -41.38 |
| Consensus MFE | -32.81 |
| Energy contribution | -33.88 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.910862 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1329114 114 + 20766785 CCCACGUCCUCGCUCUGAUGUCGUUAAGCUGUGCAAACGAUUUCGCGAGGCAAGGCGGAAAAUUCUUUCCAAAGCAACAGCAUCAGGGCAGCGAAAUGGAAGUGGCCGGGUCGG .((((.(((((((((((((((.(((..(((.(((...((....))....))).)))(((((....))))).....))).)))))))...)))))...))).))))(((...))) ( -39.10) >DroSec_CAF1 47613 114 + 1 CCCACGCCCUCGCUCUGAUGUCGUUAAGCUGUGCAAACGAUUUCGCGAGGCAAGGCGGAAAAUUCUUUCCAAAGCAACAGCAUCAGGGCAGCGGAAUGGAAGUGGGCGGGGCGG (((.(((((..((((((((((.(((..(((.(((...((....))....))).)))(((((....))))).....))).)))))))))).((.........))))))))))... ( -46.40) >DroEre_CAF1 28733 111 + 1 CCCACGCCCUCGCUCUGAUGUCGUUAAGCUGUGCAAACGAUUUCGCGAGGCAAGGCGGAAAAUUCUUUCCAAAGCAACAGCAUCAGGGCAGCGAAAUGGAAGUGGG--G-GCAG .....((((((((((((((((.(((..(((.(((...((....))....))).)))(((((....))))).....))).)))))))))).((.........)))))--)-)).. ( -43.60) >DroYak_CAF1 14721 108 + 1 ---ACACCCACGUUCUGAUGUCGUUAAGCUGUGCAAACGAUUUCGCAAGGCAAGGCGGAAAAUUCUUUCCAAAGCAACAGCAUCAGGGCAGUAAAAUGGAAGGGUG--U-GCAC ---((((((((((((((((((.(((..(((.(((...((....))....))).)))(((((....))))).....))).)))))))))).)).........)))))--)-.... ( -36.40) >consensus CCCACGCCCUCGCUCUGAUGUCGUUAAGCUGUGCAAACGAUUUCGCGAGGCAAGGCGGAAAAUUCUUUCCAAAGCAACAGCAUCAGGGCAGCGAAAUGGAAGUGGG__G_GCAG (((((..((..((((((((((.(((..(((.(((...((....))....))).)))(((((....))))).....))).))))))))))........))..)))))........ (-32.81 = -33.88 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:53 2006