Locus 755

Sequence ID 2R_DroMel_CAF1
Location 3,675,280 – 3,675,379
Length 99
Max. P 0.739928
window1314

overview

Window 4

Location 3,675,280 – 3,675,379
Length 99
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 92.09
Mean single sequence MFE -32.58
Consensus MFE -27.48
Energy contribution -27.10
Covariance contribution -0.38
Combinations/Pair 1.11
Mean z-score -1.69
Structure conservation index 0.84
SVM decision value 0.45
SVM RNA-class probability 0.739928
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3675280 99 - 20766785
CAUACGGCAGCAUCCUUGGUAAUCGCGCCAGCUGAUUGCUAUCGAUAGGAACAGCUGAGUUCGGUUAGCAGGUGUGCACACACUGUGUUUGCGAUAAGA
......((((((..((((.((((((.((((((((.((.(((....))).)))))))).)).)))))).))))..)))((((...)))).)))....... ( -36.10)
>DroSim_CAF1 7308 99 - 1
CAUACGGCAGCAUCCUUGGUAAUCGCGACAGCUGUUUGCUAUCGAUAGGAACAGCUGAGUUCGGUCAGCAGGUGUGCACACACUGUGAUUGCGAUAAGA
.....................(((((..(((((((((.(((....)))))))))))).....(((((.((((((....))).))))))))))))).... ( -30.10)
>DroEre_CAF1 6437 98 - 1
CAUACCGCG-UUUCCUUGGUAAUCGCCCCAGCUGAUUGCUAUCGAUAGGAACAGCUGAGUUCAGUCAGCAGGUGUGCACACACUGUGAUUGCGAUAAGA
..(((((..-......)))))(((((..((((((.((.(((....))).)))))))).....(((((.((((((....))).))))))))))))).... ( -30.70)
>DroYak_CAF1 4144 99 - 1
CAUACCGCGCUUUCCUUGGAAAUCGCCCCAGCUGAUUGCUAUCGAUAGGAACAGCUGAGUUCAGUCAGCAGGUGUGCACACACUGUGACUGCGAUAAGA
......(((.((((....)))).)))..((((((.((.(((....))).)))))))).(((((((((.((((((....))).))))))))).))).... ( -33.40)
>consensus
CAUACCGCAGCAUCCUUGGUAAUCGCCCCAGCUGAUUGCUAUCGAUAGGAACAGCUGAGUUCAGUCAGCAGGUGUGCACACACUGUGAUUGCGAUAAGA
.....................(((((..((((((.((.(((....))).)))))))).....(((((.((((((....))).))))))))))))).... (-27.48 = -27.10 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:19 2006