| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,674,250 – 3,674,363 |
| Length | 113 |
| Max. P | 0.799401 |
| Location | 3,674,250 – 3,674,363 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 79.29 |
| Mean single sequence MFE | -29.05 |
| Consensus MFE | -19.79 |
| Energy contribution | -19.23 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.799401 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3674250 113 + 20766785 AUAAGGAAUUAACUGCGUAGUUCAAAAACAACAAUGCAAGUUUCGUGUACUGGUAUAAAAAUGUUCAGCAGAUUCUCCAGCGUCGGAAGCUGGGGAAUCAGCUUCUGCACCAC ....((((((...(((((.(((.......))).)))))))))))(((((..(((.......((.....))(((((((((((.......))))))))))).)))..)))))... ( -34.50) >DroPse_CAF1 1760 108 + 1 AUAAAU-AGUAGGUAAGUGGCUCGACAAAG----UACAGAAAUGACAAACCGGUAUGAAGAUGUUGAGAAGGUUCUCUAGCGUCGGCAGCUGGGGAAUUAGUUUCUGCACCAC ......-....(((.....(((......))----).(((((((......(((((.((..((((((((((....)))).))))))..))))))).......))))))).))).. ( -29.12) >DroSim_CAF1 6278 113 + 1 AUAAGGUAUUAACUGCGUAGUUCAAAAACAAUAAUGCAAAUUUCACGUACUGGUAUAAAAAUGUUCAGCAGAUUCUCCAGCGUCGGCAGCUGGGGAAUCAGCUUUUGCACCAC ....(((......(((((.(((.......))).)))))........................((..(((.(((((((((((.......))))))))))).)))...))))).. ( -30.00) >DroEre_CAF1 5400 113 + 1 AUAAGGAAUUAGCAGUGUAGUUUGAAAAAGACAAAACACUUUUAACGUACUGGUAUAAAAAUGUUCAGCAGAUUCUCCAGCGUCGGCAACUGGGGAAUUAGCUUCUGCACCAC ....((..((((.(((((.((((.....))))...))))).))))................(((..(((.((((((((((.........)))))))))).)))...))))).. ( -26.50) >DroYak_CAF1 3118 113 + 1 AUAAGGAAUUAGCUGUGUAGUUGGAAAAAGACAAACCAAGUUUAACGUACUGGUAUAAAAAUGUUCAGCAGAUUCUCCAGCGUCGGCAACUGGGGAAUUAGCUUCUGCACCAC ....((.....(((((((..((....))..))).((((.((.......))))))...........)))).((((((((((.........)))))))))).((....)).)).. ( -27.10) >DroPer_CAF1 969 108 + 1 AUAAAU-AGUAGGUAAGUGGCUCGACAAAG----UACAGAUAUGACAAACCGGUAUGAAGAUGUUGAGAAGGUUCUCUAGCGUCGGCAGCUGGGGAAUUAGUUUCUGCACCAC ......-.(((((.......(((((((..(----(((.(...........).)))).....)))))))..(((((((((((.......)))))))))))....)))))..... ( -27.10) >consensus AUAAGGAAUUAGCUGAGUAGUUCGAAAAAGACAAUACAAAUUUAACGUACUGGUAUAAAAAUGUUCAGCAGAUUCUCCAGCGUCGGCAGCUGGGGAAUUAGCUUCUGCACCAC ...................................................(((................(((((((((((.......))))))))))).((....))))).. (-19.79 = -19.23 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:18 2006