Locus 752

Sequence ID 2R_DroMel_CAF1
Location 3,664,093 – 3,664,183
Length 90
Max. P 0.750465
window1310

overview

Window 0

Location 3,664,093 – 3,664,183
Length 90
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 74.81
Mean single sequence MFE -30.18
Consensus MFE -16.14
Energy contribution -17.14
Covariance contribution 1.00
Combinations/Pair 1.12
Mean z-score -1.81
Structure conservation index 0.53
SVM decision value 0.47
SVM RNA-class probability 0.750465
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3664093 90 + 20766785
GGAGA------------UCUC-CAUUUCGUUGACUAGGUCAAUUUUUUCGACUCAAUGCGAAAAUCGCCGGCAG-----------CGCUGCCGAAAGGCGAGAAUCCAGCGAAA
(((..------------((((-.....(((((.((.(((.....((((((.(.....)))))))..))))))))-----------))..(((....))))))).)))....... ( -28.60)
>DroSim_CAF1 16451 90 + 1
GGAGA------------UCUC-CAUUUCGUUGACUAGGUCAAUUUUUUCGACUGAAUGCGAAAAUCGCCGACAG-----------CGCUGCCGAAAGGCGAGAAUCCAGCGAAA
(((..------------((((-.....(((((....(((.....((((((.(.....)))))))..)))..)))-----------))..(((....))))))).)))....... ( -27.40)
>DroEre_CAF1 11768 93 + 1
GGAAAAGCUAUCGCGAAUCU----------UGACUAGGUCAAUUUUUUCGACAGAAUGCGAAAAUCGCCGGCAG-----------CGCUGCCGAGAGGCGAGAAUCCAGCGAAA
(((...(((..(((((...(----------((((...)))))..((((((.(.....)))))))))).))..))-----------)..((((....))))....)))....... ( -27.00)
>DroYak_CAF1 12487 102 + 1
GGAAAAUAUAUCGCGAAUCUC-CAUUUCGUUGACUAGGUCAACUUUUUCGACUGAAUGCGAAAAUCGCCGGCAG-----------CGCUGCCGAAAGGCGAGAAUCCAGCGAAA
..........((((((.((((-......((((((...)))))).....((.(((...(((.....)))...)))-----------))..(((....))))))).))..)))).. ( -31.40)
>DroAna_CAF1 10968 106 + 1
AGAG-----AUCGGAGAUCUCGCAUUUCGUUGACUAGGUCAAUUUUUGCGACCGAAUGCGAAAAUUGCCGGCAAAAGGGGGAGACCGCUGCCGCUGCCAUAGCAUCU---CAAA
.(((-----(((...))))))((.............((.(((((((((((......)))))))))))))((((..((.((....)).)).....))))...))....---.... ( -36.50)
>consensus
GGAGA____AUCG___AUCUC_CAUUUCGUUGACUAGGUCAAUUUUUUCGACUGAAUGCGAAAAUCGCCGGCAG___________CGCUGCCGAAAGGCGAGAAUCCAGCGAAA
(((.........................((((((...)))))).((((((.......(((.....)))((((((.............)))))).....)))))))))....... (-16.14 = -17.14 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:15 2006