Locus 751

Sequence ID 2R_DroMel_CAF1
Location 3,662,514 – 3,662,617
Length 103
Max. P 0.657615
window1309

overview

Window 9

Location 3,662,514 – 3,662,617
Length 103
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.43
Mean single sequence MFE -27.69
Consensus MFE -16.75
Energy contribution -16.94
Covariance contribution 0.20
Combinations/Pair 1.19
Mean z-score -2.33
Structure conservation index 0.60
SVM decision value 0.26
SVM RNA-class probability 0.657615
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3662514 103 - 20766785
AUGGCAGCCGAGUAAACAAGCUGCGGGCAAAAC-------AAAACAUACAUAAG------C-AGCCGGCAACGCGGAAGCGAAUUUGUU-UACGUCU-UAUCCA-AACGGCAAUUAAAUA
......((((.(((((((((.(((.(((.....-------..............------.-.))).))).(((....)))..))))))-)))(...-...)..-..))))......... ( -29.10)
>DroSec_CAF1 10987 103 - 1
AUGGCAGCCAAGUAAACAAGCUGCGGGCAAAAC-------AAAACACACAUAAU------C-AGCCGGCAACGCGGAAGCGAAUUUGUU-UACGUCU-UAGCCG-AGCGGCAAUUAAAUA
......(((..(((((((((.(((.(((.....-------..............------.-.))).))).(((....)))..))))))-)))(.((-(....)-))))))......... ( -29.60)
>DroSim_CAF1 14844 103 - 1
AUGGCAGCCAAGUAAACAAGCUGCGGGCAAAAC-------AAAACACACAUAAU------C-AGCCGGCAACGCGGAAGCGAAUUUGUU-UACGUCU-UAUCCG-AGCGGCAAUUAAAUA
......(((..(((((((((.(((.(((.....-------..............------.-.))).))).(((....)))..))))))-)))(.((-(....)-))))))......... ( -29.60)
>DroEre_CAF1 10423 101 - 1
AUGGCAGCCAAGUAAACAAGCUGCGGGCAAAAC-------AAAAC--ACACCAG------C-AGCCGGCAACGCGGAAGCGAAUUUGUU-UACGUCU-UAUCCG-AGUCUCAAUUAGAUA
.(((.......(((((((((((((((.......-------.....--...)).)------)-)))......(((....)))...)))))-)))....-...)))-.((((.....)))). ( -27.10)
>DroYak_CAF1 11102 108 - 1
AUGGCAGCCAAGUAAACAAGCAGCGGGCAAAACAAAAAACAAAAC--ACACCAU------C-AGCCGGCAACGCGGAAGCGAACUUGUU-UACGUCU-UAUCCG-AGCGGCAAUUAAAUA
......(((..(((((((((..((.(((.................--.......------.-.))).))..(((....)))..))))))-)))(.((-(....)-))))))......... ( -30.87)
>DroAna_CAF1 8667 110 - 1
AUGGGAGGCAAGUAAACAAGCU---GGCAAAAA-------AAAUAACAACUAUAUAGUGGCGGGUGGGCAACGCGGAAGUGACUUUGUUUUUCGUCUUUAUCCAAAGCAGUAAUUAGAAA
.((((((((....(((((((((---.((.....-------........(((....))).....)).)))..(((....)))...))))))...)))))...)))................ ( -19.87)
>consensus
AUGGCAGCCAAGUAAACAAGCUGCGGGCAAAAC_______AAAACACACAUAAU______C_AGCCGGCAACGCGGAAGCGAAUUUGUU_UACGUCU_UAUCCG_AGCGGCAAUUAAAUA
.(((.......(((((((((.(((.(((...................................))).))).(((....)))..)))))).)))........)))................ (-16.75 = -16.94 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:14 2006