Locus 75

Sequence ID 2R_DroMel_CAF1
Location 1,328,485 – 1,328,598
Length 113
Max. P 0.622718
window150

overview

Window 0

Location 1,328,485 – 1,328,598
Length 113
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 80.33
Mean single sequence MFE -33.68
Consensus MFE -23.30
Energy contribution -23.93
Covariance contribution 0.63
Combinations/Pair 1.16
Mean z-score -1.64
Structure conservation index 0.69
SVM decision value 0.18
SVM RNA-class probability 0.622718
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1328485 113 - 20766785
UUCCUGCGAGCAAGAAACUUGCAAGUGU-------GUUCGCUUCCCAAGCGAAUGAGCGGCGUGCAAGUGUGUAUCAAAAGAUGCAUUGGACCGUAGAAGGACAUUCUGGUCGGGAUGUG
...(((((..(.....(((((((.((.(-------(((((((.....)))))))).))....)))))))(((((((....)))))))..)..)))))....(((((((....))))))). ( -38.70)
>DroSec_CAF1 47004 102 - 1
UUCCUGCGAGCAAGAAACUUGCAAGUGU-------GUUCGCUCCCCAAGCGAAUGU-----------AUGUGUAUCGAAAGAUGCAUUGGACCGUUGAAGGACAAUCUGGUCGGGAUGUG
.(((((((((.......)))))..(((.-------.((((((.....))))))..)-----------))(((((((....)))))))..((((((((.....))))..)))))))).... ( -35.20)
>DroSim_CAF1 26110 102 - 1
UUCCUGCGAGCAAGAAACUUGCAAGUGU-------GUUCGCUCCCCAAGCGAAUGU-----------AUGUGUAUCGAAAGAUGCAUUGGACCGUUGAAGGACAAUCUGGUCGGGAUGUG
.(((((((((.......)))))..(((.-------.((((((.....))))))..)-----------))(((((((....)))))))..((((((((.....))))..)))))))).... ( -35.20)
>DroYak_CAF1 14102 114 - 1
UUCCGGCGAGCAAGAAAUUUACAAUUGUACAAAGUGUACACUCCCCAAGUGAAUGAGCGGU------AUAAGUAUCAUAAUAUGCAUUGCACCGUAUAAGGGCAUUCUGGCAGGAAUGUG
..((((.(((.((....))......(((((.....)))))))).))..........(((((------.(((((((......)))).))).)))))....))(((((((....))))))). ( -25.60)
>consensus
UUCCUGCGAGCAAGAAACUUGCAAGUGU_______GUUCGCUCCCCAAGCGAAUGA___________AUGUGUAUCAAAAGAUGCAUUGGACCGUAGAAGGACAAUCUGGUCGGGAUGUG
..((((((.(((((...))))).............(((((((.....)))))))...............(((((((....))))))).....)))...)))(((((((....))))))). (-23.30 = -23.93 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:50 2006