| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,654,757 – 3,654,850 |
| Length | 93 |
| Max. P | 0.560071 |
| Location | 3,654,757 – 3,654,850 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 76.57 |
| Mean single sequence MFE | -32.53 |
| Consensus MFE | -18.13 |
| Energy contribution | -18.91 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.560071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3654757 93 + 20766785 UUCACCGUUUGUGGUUAUAUGGCGGCCAUGUUUAUGGG--CAGGCGGUCAAAUGCGCCGCUUAUUGGCGA--AGGAAUCGGCUCUACGGCGUAUUUG ...(((((((((....((((((...))))))......)--))))))))(((((((((((......(.(((--.....))).)....))))))))))) ( -33.90) >DroPse_CAF1 2286 72 + 1 UUCCCUGUAGAGUUUUAUAUGGGGGCCAUUUUUAUUGG--AAGGCGGUCAAAUACGCCGCUUCUUGGCGG--UAGA--------------------- ..(((((((........)))))))((((........((--(((.((((.......)))))))))))))..--....--------------------- ( -22.30) >DroSec_CAF1 2478 93 + 1 UUCGCCGUUUGCGGUUAUAUGGCGGCCAUGUUUAUGGG--CAGGCGGUCAAAUGCGCCGCUUAUUGGCGA--AGGAAUCGGCUCUGUGGCGUACUCG (((((((...((((((((.((((.(((.((((....))--))))).)))).))).)))))....))))))--).((..((.(.....).))...)). ( -36.10) >DroEre_CAF1 2437 93 + 1 UCCGCCGUAUGCGCUUAUAUGGCGACCAUGUUUAUGGG--CAGGCGGUCAAAUGCGCCGCUUAUUGGCGA--AGGAAUCGGCUCUGCGGCGUACUCG .(((((.....((((.....)))).((((....)))).--..))))).....((((((((.....(.(((--.....))).)...)))))))).... ( -36.10) >DroYak_CAF1 2491 93 + 1 UCCGCCGUGUGCGGUUAUAUGACGGCCAUGUUUAUGGG--CAGGCGGUCAAAUGCGCCGCUUAUUGGCGA--AGGAAUCGGUUCUGCGACGUACUCG ..(((((...((((((((.((((.(((.((((....))--))))).)))).))).)))))....))))).--.....(((......)))........ ( -32.90) >DroAna_CAF1 2155 95 + 1 UCCGCCGUAGUUGGUUAUAUGGCGGCCAUGUUUAUUGGACAAGGCGGUCAAAUGCGCCGCUUAUUGGCGGCCAAGAAUCGU--UGAAAGUGUUGUUG .((((((((........))))))))(((.......)))((((.((..((((.((.((((((....)))))))).......)--)))..)).)))).. ( -33.90) >consensus UCCGCCGUAUGCGGUUAUAUGGCGGCCAUGUUUAUGGG__CAGGCGGUCAAAUGCGCCGCUUAUUGGCGA__AGGAAUCGGCUCUGCGGCGUACUCG ..(((((((((....)))))))))((((.............(((((((.......)))))))..))))............................. (-18.13 = -18.91 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:12 2006