Locus 747

Sequence ID 2R_DroMel_CAF1
Location 3,650,909 – 3,651,017
Length 108
Max. P 0.500000
window1305

overview

Window 5

Location 3,650,909 – 3,651,017
Length 108
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 81.28
Mean single sequence MFE -29.78
Consensus MFE -20.92
Energy contribution -21.08
Covariance contribution 0.17
Combinations/Pair 1.20
Mean z-score -1.21
Structure conservation index 0.70
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3650909 108 - 20766785
UUAAGAUCGCCUGUCUGUCGGACAUCCGCGAUCUGUUUCCCGACAAGGAGCCCUUCUACGCCGGCUACGGCAACCGCAUCAAUGUAAGUCUGGCGGUUCCUAUUAUCU
...(((((((.((((.....))))...)))))))...........(((((((((...((((((....))))....(((....)))..))..)).)))))))....... ( -34.30)
>DroVir_CAF1 11903 102 - 1
UUAAGAUCGCCUGUCUGUCGGAUAUACGCGAUCUCUUCCCGGACAAGGAGCCCUUCUAUGCCGGCUACGGCAAUCGUAUUAAUGUGAGUAUUAAUUU-G--UUUA---
...(((((((.((((.....))))...)))))))......(((((((...........(((((....)))))......((((((....)))))))))-)--))).--- ( -24.40)
>DroSec_CAF1 11472 104 - 1
UUAAGAUCGCCUGUCUGUCGGACAUCCGCGAUCUGUUCCCCGACAAGGAGCCCUUCUACGCCGGCUACGGCAACCGCAUCAAUGUAAGUCUGGCGGGC----UUAUCA
....(((.(((((((.(.(..((((..(((....(((((.......)))))........((((....))))...)))....))))..).).)))))))----..))). ( -33.80)
>DroSim_CAF1 14942 104 - 1
UUAAGAUCGCCUGUCUCUCGGACAUCCGCGAUCUGUUUCCCGACAAGGAGCCCUUCUACGCCGGCUACGGCAACCGCAUCAAUGUAAGUCUGGCGGUC----UUAUCU
.((((((((((.(.((..(((....))(((......((((......)))).........((((....))))...)))......)..)).).)))))))----)))... ( -34.20)
>DroEre_CAF1 11497 93 - 1
UUAAGAUCGCCUGUCUGUCGGACAUCCGUGACCUGUUUCCCGACAAGGAGCCCUUUUACGCCGGCUACGGCAACCGCAUCAAUGUGAGUAUC---------------U
.(((((..((((...(((((((((.........)))...)))))).)).))..))))).((((....)))).((((((....)))).))...---------------. ( -22.10)
>DroMoj_CAF1 12928 101 - 1
UUAAGAUCGCUUGUCUAUCGGACAUUCGCGAUCUAUUCCCGAAGAAGGAUCCCUUCUAUGCGGGCUAUGGCAAUCGUAUUAAUGUGAGUCAAACUUU----AUUA---
...(((((((.((((.....))))...)))))))...((((.((((((...))))))...))))...((((...(((....)))...))))......----....--- ( -29.90)
>consensus
UUAAGAUCGCCUGUCUGUCGGACAUCCGCGAUCUGUUCCCCGACAAGGAGCCCUUCUACGCCGGCUACGGCAACCGCAUCAAUGUAAGUCUGGCGGU_____UUA__U
...(((((((.((((.....))))...)))))))(((((.......)))))........((((....))))..................................... (-20.92 = -21.08 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:09 2006