Locus 746

Sequence ID 2R_DroMel_CAF1
Location 3,648,418 – 3,648,510
Length 92
Max. P 0.704309
window1304

overview

Window 4

Location 3,648,418 – 3,648,510
Length 92
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 81.12
Mean single sequence MFE -27.70
Consensus MFE -15.21
Energy contribution -14.77
Covariance contribution -0.44
Combinations/Pair 1.25
Mean z-score -2.33
Structure conservation index 0.55
SVM decision value 0.36
SVM RNA-class probability 0.704309
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3648418 92 - 20766785
UACACAUUGGUGUACAAUGGCCCACG--GACAACGAAGUGGGCAG-UUAAGUGGCCACAAACGGUC----GGUCAUGCAAACUCAGUGGCAGAUCCACA
....(((((.....)))))((((((.--.........))))))((-((..((((((((.....)).----))))))...))))..((((.....)))). ( -30.50)
>DroPse_CAF1 10843 95 - 1
U-CAUAUUGGCAUACAAAGGCAUACAUAAACCACAAAGUGGACACUUUAAGUGA-CACAAAUGGUCGUCUGACC--ACAAAUUCAGUGGCUUAGCCAUA
.-.....((((.......(.....).(((.((((...(((..(((.....))).-)))...(((((....))))--)........)))).))))))).. ( -23.10)
>DroSim_CAF1 12469 92 - 1
UACACAUUGGUGUACAAUGGCCCACG--GACAACGAAGUGGGCAG-UUAAGUGGCCACAAACGGUC----GGUCAUGCAAACUCAGUGGCAGAUCCACA
....(((((.....)))))((((((.--.........))))))((-((..((((((((.....)).----))))))...))))..((((.....)))). ( -30.50)
>DroEre_CAF1 9031 92 - 1
UACACAUUGGUGUACAAAGGCCCACG--GACAACGAAGUGGGCAG-UUAAGUGACCACAAACGGUC----GGUCAUGCAAACUCAGUGGCAGAUCCACA
(((((....))))).....((((((.--.........))))))((-((..((((((((.....)).----))))))...))))..((((.....)))). ( -29.90)
>DroYak_CAF1 8779 96 - 1
UACACAUUGGUGUACAAAGGCCCACG--GACAACGAAGUGGGCAG-UUAAGUGACCACAAACGGUCGGUCGGUCAUGCAAACUCAGUGGCAGAUCCACA
(((((....))))).....((((((.--.........))))))((-((..((((((((.........)).))))))...))))..((((.....)))). ( -29.10)
>DroPer_CAF1 10989 95 - 1
U-CAUAUUGGCAUACAAAGGCAUACAUAAACCACAAAGUGGACACUUUAAGUGA-CACAAAUGGUCGUCUGACC--ACAAAUUCAGUGGCUUAGCCAUA
.-.....((((.......(.....).(((.((((...(((..(((.....))).-)))...(((((....))))--)........)))).))))))).. ( -23.10)
>consensus
UACACAUUGGUGUACAAAGGCCCACG__GACAACGAAGUGGGCAG_UUAAGUGACCACAAACGGUC____GGUCAUGCAAACUCAGUGGCAGAUCCACA
..(((.(((.....)))..((((((............)))))).......))).........((((....))))...........((((.....)))). (-15.21 = -14.77 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:08 2006