| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,328,100 – 1,328,260 |
| Length | 160 |
| Max. P | 0.729359 |
| Location | 1,328,100 – 1,328,220 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.57 |
| Mean single sequence MFE | -28.15 |
| Consensus MFE | -22.69 |
| Energy contribution | -22.75 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.696415 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1328100 120 + 20766785 GCAGGAAGACACAUUCAAUAAAUAAAUUUAUUCAUGACUUCGCUCGCCCCACCGCUGGCAAAGAUGCUGCGAACAUUGUCAUAUUUGACUGCUGCGCUCGAGUGCGGCAUUAAAAAUUUU ((((((((...(((..((((((....)))))).))).))))(((.((......)).))).......)))).......((((....))))((((((((....))))))))........... ( -31.50) >DroSec_CAF1 46637 108 + 1 GCAGGAAGACACAUUCAAUAAAUAAAUUUAUUCAUGACUUCG------------CUGGCAAAGAUGCUGCGAACAUUGUCAUAUUUGACUGCUGCGCUCGAGUGCGGCAUUAAAAAUUUU .......(((((((..((((((....)))))).)))..((((------------(.((((....)))))))))...))))...(((((.((((((((....)))))))))))))...... ( -28.90) >DroSim_CAF1 25748 108 + 1 GCAGGAAGACACAUUCAAUAAAUAAAUUUAUUCAUGACUUCG------------CUGGCAAAGAUGCUGCGAACAUUGUCAUAUUUGACUGCUGCGCUCGAGUGCGGCAUUAAAAAUUUU .......(((((((..((((((....)))))).)))..((((------------(.((((....)))))))))...))))...(((((.((((((((....)))))))))))))...... ( -28.90) >DroEre_CAF1 27829 116 + 1 GCGGGAAUACACAUUCAAUAAAUAAAUUUAUUCAUGACUUCGCUCUCCCC----ACGACAAAGAUGCUGCAGACAUUGUCAUAUUUGACUGCUGCGCUCGAGUGCGGCAUUAAAAAUUUU (.((((........((((((((....)))))...)))........)))))----........((((((((((.((..((((....))))))))))((......))))))))......... ( -23.29) >consensus GCAGGAAGACACAUUCAAUAAAUAAAUUUAUUCAUGACUUCG____________CUGGCAAAGAUGCUGCGAACAUUGUCAUAUUUGACUGCUGCGCUCGAGUGCGGCAUUAAAAAUUUU ((((((((...(((..((((((....)))))).))).)))).................((....)))))).......((((....))))((((((((....))))))))........... (-22.69 = -22.75 + 0.06)
| Location | 1,328,140 – 1,328,260 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.67 |
| Mean single sequence MFE | -34.04 |
| Consensus MFE | -22.94 |
| Energy contribution | -23.60 |
| Covariance contribution | 0.66 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.729359 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1328140 120 + 20766785 CGCUCGCCCCACCGCUGGCAAAGAUGCUGCGAACAUUGUCAUAUUUGACUGCUGCGCUCGAGUGCGGCAUUAAAAAUUUUACGGCACCUGCCAAUUGCCGCAGCGCACCGGAAACGCACA .((..(((........)))......((((((......((((....))))((((((((....)))))))).............(((....)))......))))))))..((....)).... ( -41.50) >DroSec_CAF1 46677 108 + 1 CG------------CUGGCAAAGAUGCUGCGAACAUUGUCAUAUUUGACUGCUGCGCUCGAGUGCGGCAUUAAAAAUUUUACGACACCUGCCAAUUGCCGCAGCGCACCGGAAACGCACA ..------------...((...(.(((((((......((((....))))((((((((....)))))))).............................))))))))...(....)))... ( -32.50) >DroSim_CAF1 25788 108 + 1 CG------------CUGGCAAAGAUGCUGCGAACAUUGUCAUAUUUGACUGCUGCGCUCGAGUGCGGCAUUAAAAAUUUUACGGCACCUGCCAAUUGCCGCAGCGCACCGGAAACGCACA ..------------...((...(.(((((((......((((....))))((((((((....)))))))).............(((....)))......))))))))...(....)))... ( -37.00) >DroEre_CAF1 27869 116 + 1 CGCUCUCCCC----ACGACAAAGAUGCUGCAGACAUUGUCAUAUUUGACUGCUGCGCUCGAGUGCGGCAUUAAAAAUUUUACGGCACCUGCCAAUUGCCGCAGCGCACCGGAAACGCACA .((.......----........(.((((((.......((((....))))((((((((....)))))))).............(((....))).......)))))))...(....)))... ( -35.00) >DroYak_CAF1 13848 94 + 1 -----UUCCC----AAGGCAAAAAUACCGUGAAUAUUGUCAUAUUU-----------------GCGGCAUUAAACAUUUUACGGCACUUGCUAAUUGCCGCAGCGUAACGGAAACGCACA -----.....----..(((((.(((.(((..(((((....))))).-----------------.))).)))...........(((....)))..)))))...((((.......))))... ( -24.20) >consensus CG_____CCC____CUGGCAAAGAUGCUGCGAACAUUGUCAUAUUUGACUGCUGCGCUCGAGUGCGGCAUUAAAAAUUUUACGGCACCUGCCAAUUGCCGCAGCGCACCGGAAACGCACA ................(((((.((((((((.......((((....))))....((......))))))))))...........(((....)))..))))).........((....)).... (-22.94 = -23.60 + 0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:49 2006