Locus 737

Sequence ID 2R_DroMel_CAF1
Location 3,607,695 – 3,607,793
Length 98
Max. P 0.574926
window1291

overview

Window 1

Location 3,607,695 – 3,607,793
Length 98
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 83.49
Mean single sequence MFE -31.90
Consensus MFE -22.90
Energy contribution -23.35
Covariance contribution 0.45
Combinations/Pair 1.18
Mean z-score -1.78
Structure conservation index 0.72
SVM decision value 0.08
SVM RNA-class probability 0.574926
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3607695 98 - 20766785
--AAAAACC--UUAAGUGUAAGGUAUUUUCAACGCACCGCUCUGGCCAACUGUCGCAUUUUUCGUCUCUCGCGGAUUAUCCGGCGCUUGGCCACGCCGGGGC
--....(((--(((....)))))).........((.(((...(((((((.(((((.((..(((((.....)))))..)).))))).)))))))...))).)) ( -33.90)
>DroPse_CAF1 38800 99 - 1
--GAUAUCCCACUUGAUGAGAGACGCUCUC-ACUCACCGCCCGCGCAAGAUGUCGCAUCUUUCGUCUCUCCCGUAUUAUCCGGCGCUUGGCCACGCCAGGAC
--...............((((((((.....-.......((....))((((((...)))))).))))))))........(((((((........)))).))). ( -25.40)
>DroSec_CAF1 12778 98 - 1
--CAUUUCC--CUAAGUGUAAGGUAUUUUCAACGCACCGCUCUGGCCAACUGCCGCAUUUUUCGUCUCUCGCGGAUUAUCCGGCGCUUGGCCACGCCGGGGC
--....(((--(...((((...(......)...)))).((..(((((((.(((((.((..(((((.....)))))..)).))))).))))))).)).)))). ( -34.60)
>DroSim_CAF1 12940 98 - 1
--CAUUUCC--CUAAGUGUAAGGUAUUUUCAACGCACCGCUCUGGCCAACUGCCGCAUUUUUCGUCUCUCGCGGAUUAUCCGGCGCUUGGCCACGCCGGGGC
--....(((--(...((((...(......)...)))).((..(((((((.(((((.((..(((((.....)))))..)).))))).))))))).)).)))). ( -34.60)
>DroEre_CAF1 12980 97 - 1
--CAUUUUU--UUGAGUGUUAGGUAUU-UCAACCCACCGCUCUGGCCAACUGUCGCAUUUUUCGUCUUUCGCGGAUUAUACGGCGCUUGGCCACGCCGGGGC
--.......--..(((((...(((...-...)))...)))))(((((((.(((((.((..(((((.....)))))..)).))))).))))))).((....)) ( -31.90)
>DroYak_CAF1 12955 100 - 1
AUCAUUUUU--AUAAGUGUUGGGUAUUUUCAACCCACCGCUCUGGCCAACUGGCGCAUCUUUCGUCUCUCUCGAAUUAUCCGGCGCUUGGCCACGCCGGGGC
..(((((..--..))))).(((((.......)))))(((...((((((...(((((....((((.......)))).......)))))))))))...)))... ( -31.00)
>consensus
__CAUUUCC__CUAAGUGUAAGGUAUUUUCAACGCACCGCUCUGGCCAACUGUCGCAUUUUUCGUCUCUCGCGGAUUAUCCGGCGCUUGGCCACGCCGGGGC
....................................(((.(.(((((((.(((((.((..((((.......))))..)).))))).))))))).).)))... (-22.90 = -23.35 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:55 2006