Locus 734

Sequence ID 2R_DroMel_CAF1
Location 3,594,714 – 3,594,825
Length 111
Max. P 0.806865
window1288

overview

Window 8

Location 3,594,714 – 3,594,825
Length 111
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 92.30
Mean single sequence MFE -38.44
Consensus MFE -32.64
Energy contribution -33.44
Covariance contribution 0.80
Combinations/Pair 1.14
Mean z-score -1.46
Structure conservation index 0.85
SVM decision value 0.63
SVM RNA-class probability 0.806865
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3594714 111 + 20766785
CAAAGCGUUAUUGUGGUG-GCGAUUCGUUCUUGGCGAAAGCUUUUUCUCCACCAACAUCGCUCAGCUGGGGAAAUUCAGUCGCGCUCCCGACUCCAACGCUGCCGCACCGUA
....(((....(((((..-(((..........(((....))).((((((((.(...........).))))))))...(((((......)))))....)))..))))).))). ( -34.00)
>DroSec_CAF1 7370 112 + 1
CAAAGCGUUGUUGUGGUGGGCGAUUCGUUCUUGGCGAAAGCUUUUUCUCUACCAACAUCGCUCAGCUGGCGGCGUUCAGUCGCGCUCCCGACUCCAACGCUGCCGCACCGUA
...((((.((((((((.((((..(((((.....))))).)))).....))).))))).))))..((.(((((((((.(((((......)))))..)))))))))))...... ( -43.10)
>DroSim_CAF1 8580 112 + 1
CAAAGCGUUGUUGUGAUGGGCGAUUCGUUCUUGGCGAAAGCUUUUUCUCCACCAACAUCGCUCAGCUGGCGGCGUUCAGUCGCGCUCCCGACUCCAACGCUGCCGCACCGUA
...((((.(((((.(.((((.((.........(((....)))...)))))))))))).))))..((.(((((((((.(((((......)))))..)))))))))))...... ( -42.40)
>DroEre_CAF1 7729 111 + 1
CAAAGCGUUGUUGUGGUU-GCGAUUCGUUCUUGGCGAAAGCUUUUUCUCCACCAAUACCGCUCAGCUGGCGGCGUUCAGUCGCGCUCCCGACUCCAACGCUGCCGCAACGUA
....(((((((.(((((.-.............(((....)))..............)))))......(((((((((.(((((......)))))..)))))))))))))))). ( -41.69)
>DroYak_CAF1 7652 111 + 1
CAAAGCGUUGUUGUGGUU-GCGGUUCGUUCUUGGCAAAAGCUUUUUCUCCACCAAUGCUGCUCAGCUGGCGACGUUCAGUCGUGCUUCCGACUCCAACGCUGCCGUACCGUA
...(((((((..((((..-(((((........(((....)))........)))...(((....)))..(((((.....)))))))..)).))..)))))))........... ( -30.99)
>consensus
CAAAGCGUUGUUGUGGUG_GCGAUUCGUUCUUGGCGAAAGCUUUUUCUCCACCAACAUCGCUCAGCUGGCGGCGUUCAGUCGCGCUCCCGACUCCAACGCUGCCGCACCGUA
...((((.((((((((...((..(((((.....))))).)).......))).))))).))))..((.(((((((((.(((((......)))))..)))))))))))...... (-32.64 = -33.44 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:52 2006