Locus 733

Sequence ID 2R_DroMel_CAF1
Location 3,589,872 – 3,589,975
Length 103
Max. P 0.980898
window1287

overview

Window 7

Location 3,589,872 – 3,589,975
Length 103
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 75.91
Mean single sequence MFE -34.73
Consensus MFE -22.30
Energy contribution -23.63
Covariance contribution 1.34
Combinations/Pair 1.20
Mean z-score -2.24
Structure conservation index 0.64
SVM decision value 1.87
SVM RNA-class probability 0.980898
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3589872 103 + 20766785
CGUGGAUGCCAGCAACA-------CACCAACAGCAGCAAUAGUUAAGACGACAACAUCGGCGAUGCCGGGCAUUCCCGGCCAGUUGCUGAUGCUCGUCAAGGAGCAACAG
.(((..((....)).))-------).......(((((....)))..(((((...((((((((((((((((....))))))..)))))))))).))))).....))..... ( -37.30)
>DroSec_CAF1 2198 103 + 1
CGCGGAUGGAAGCAACA-------CGCCAACAGCAACAAUAGUGAAGACGACGACAUCGGCGAUGCCGGCCAUUCCCGGCCAGCUGCUGAUGCUGGUCAAGGAGCAAGAG
.((((.((....)).).-------))).....((..(....((....))(((.(((((((((..((.((((......)))).)))))))))).).)))..)..))..... ( -32.50)
>DroSim_CAF1 2222 103 + 1
CGCGGAUGGAAGCAACA-------CGCCAACAGCAACAAUAGUGAAGACGACGACAUCGGCGAUGCCGGGCAUUCCCGGCCAGUUGCUGAUGCUCGUCAAGGAGCAAGAG
.((((.((....)).).-------))).....((..(....((....))(((((((((((((((((((((....))))))..)))))))))).)))))..)..))..... ( -40.50)
>DroEre_CAF1 2301 96 + 1
CGUAGAUGCAACUACAA-------CGCCAUCAGCAGCAAUAGUGAAGACG---ACAUCGGCGAUGCCGGGAAUUCCCGGUCAGUUGCUGAUGCUCGUCAAGGAGCA----
.((((......))))..-------.(((.(((..(....)..))).((((---(((((((((((((((((....))))))..)))))))))).)))))...).)).---- ( -39.10)
>DroYak_CAF1 2264 96 + 1
CGUAGAUGAAACCAGCA-------CGCCUUCAGCAGCAAUAGUGAAGACG---ACAUCAGCGAUGCCGGGCAUUCCCGGCCAAUUGCUGAUGCUCGUCAAGGAGCA----
..............((.-------..((((((..(....)..))))((((---(((((((((((((((((....))))))..)))))))))).)))))..)).)).---- ( -38.50)
>DroAna_CAF1 2350 103 + 1
CAUCCACAUCAUCAUCAUCAAUAGCAGCAGAAGCAACCAUAGUAACCACAAGUCCAUCGGCG---GCGGCCACUCCAGGCCAUUUGUUGAUGCUCGUAAAAGAUAC----
................(((....((((((..(((((.....((..((...........))..---))((((......))))..)))))..)))).))....)))..---- ( -20.50)
>consensus
CGUGGAUGCAAGCAACA_______CGCCAACAGCAACAAUAGUGAAGACGAC_ACAUCGGCGAUGCCGGGCAUUCCCGGCCAGUUGCUGAUGCUCGUCAAGGAGCA____
..............................................((((....((((((((((((((((....))))))..))))))))))..))))............ (-22.30 = -23.63 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:51 2006