| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,574,330 – 3,574,427 |
| Length | 97 |
| Max. P | 0.967823 |
| Location | 3,574,330 – 3,574,427 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 83.82 |
| Mean single sequence MFE | -20.55 |
| Consensus MFE | -18.49 |
| Energy contribution | -19.16 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.967823 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3574330 97 + 20766785 CACCACUGGCGAAGAUUUGCCAAUCGUUUGGCUCUCCGGCACACC--------AACACACAUUCGCCCAGAGAGCCGCCACUCACUGAAACACACUUAUGCACA--C ......((((...((((....))))....(((((((.(((.....--------...........)))..)))))))))))........................--. ( -23.49) >DroSec_CAF1 8024 101 + 1 CACCACUGGCGAAGAUUUGCCAAUCGUUUGGCUCUCCGGCACACCAACUCACCAACACACAUUCGCCCAGAGAGCCGCCACUCACUGAAACACACUCAU----A--C ......((((...((((....))))....(((((((.(((........................)))..)))))))))))...................----.--. ( -23.06) >DroYak_CAF1 8374 96 + 1 CACCACUGCCGAAGAUUUGC-AAUCGUUUGGCUCUCCGGCACACC--------ACUACACCGUCACCCAGAGAGCCGCCACUCACUCAAACACACUCAC--ACACAA .......((....(((....-.)))....(((((((.((...((.--------........))...)).))))))))).....................--...... ( -15.10) >consensus CACCACUGGCGAAGAUUUGCCAAUCGUUUGGCUCUCCGGCACACC________AACACACAUUCGCCCAGAGAGCCGCCACUCACUGAAACACACUCAU__ACA__C ......((((...((((....))))....(((((((.(((........................)))..)))))))))))........................... (-18.49 = -19.16 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:47 2006