Locus 726

Sequence ID 2R_DroMel_CAF1
Location 3,549,700 – 3,549,791
Length 91
Max. P 0.510238
window1279

overview

Window 9

Location 3,549,700 – 3,549,791
Length 91
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 83.17
Mean single sequence MFE -28.42
Consensus MFE -21.23
Energy contribution -21.32
Covariance contribution 0.09
Combinations/Pair 1.13
Mean z-score -1.44
Structure conservation index 0.75
SVM decision value -0.05
SVM RNA-class probability 0.510238
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3549700 91 + 20766785
CAAUAUCCGAAUCGGAGGGCCCACUUGUCCGAGCGCUCGGACAGG-GCUCUCGAGAGCCAUAAGUACCCAUACCAUCCA----------UGCCCAUGCCCA-------G
.....((((...))))((((....((((((((....))))))))(-((((....)))))....................----------.)))).......-------. ( -31.50)
>DroVir_CAF1 24683 95 + 1
CAAUAUCCAAAUCCGAGUGCCCACUUGGCUGCGCGUUCGGACAGGCACACUCGAGCGCCAUAAGUACCCAUACC---CAUGCCCA----UGCCCAUGCCCA-------G
............((((((....))))))(((.((((..((.(((((.(......).)))....(((....))).---........----)))).)))).))-------) ( -18.90)
>DroSec_CAF1 24124 100 + 1
CAAUAUCCGAAUCGGAGGGCCCACUUGUCCGAGCGCUCGGACAGG-GCUCUCGAGCUCCAUAAGUAUCCAUACCAUCCA-UACCAUCCGUGCCCAUGCCCA-------G
.....((((...))))((((.....(((((((....)))))))((-((.(..((.........(((....)))......-.....)).).))))..)))).-------. ( -29.05)
>DroSim_CAF1 19839 100 + 1
CAAUAUCCGAAUCGGAGGGCCCACUUGUCCGAGCGCUCGGACAGG-GCUCUCGAGCUCCAUAAGUACCCAUACCAUCCA-UACCAUCCGUGCCCAUGCCCA-------G
.....((((...))))((((.(.(((((((((....)))))))))-(((....))).......................-........).)))).......-------. ( -29.00)
>DroEre_CAF1 16801 107 + 1
CAAUAUCCGAAUCGGAGGGCCCACUUGUCCGAGCGCUCGGACAGG-GCUCUCGAGCCCCAUAAGUACCCAUACCAUCCA-UGCCAUCCAUGCCCAUGCCCAUGCCCAUG
.....((((...))))((((..((((((((((....)))))).((-(((....)))))...))))............((-((.....)))).....))))......... ( -32.40)
>DroYak_CAF1 6994 95 + 1
CAAUAUCCGAAUCGGAGGGCCCACUUGUCCGAGCGCUCGGACAGG-GCUCUCAAGCCCCAUAAGUACCCAUACCAUCCA-UACCAUCCAUGC------------CCGUG
.....((((...))))((((.....(((((((....)))))))((-(((....))))).....................-..........))------------))... ( -29.70)
>consensus
CAAUAUCCGAAUCGGAGGGCCCACUUGUCCGAGCGCUCGGACAGG_GCUCUCGAGCCCCAUAAGUACCCAUACCAUCCA_UACCAUCC_UGCCCAUGCCCA_______G
..............((((((...(((((((((....))))))))).))))))......................................................... (-21.23 = -21.32 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:43 2006