Locus 725

Sequence ID 2R_DroMel_CAF1
Location 3,549,045 – 3,549,136
Length 91
Max. P 0.908058
window1278

overview

Window 8

Location 3,549,045 – 3,549,136
Length 91
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 91.54
Mean single sequence MFE -20.55
Consensus MFE -18.09
Energy contribution -18.15
Covariance contribution 0.06
Combinations/Pair 1.08
Mean z-score -1.82
Structure conservation index 0.88
SVM decision value 1.06
SVM RNA-class probability 0.908058
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3549045 91 + 20766785
UUCUAACAUAUUGUGCAAAUUCAUUAAGCCCAAACCCCGGCUCGAGACUUGAUUUUGAUCAAUUACAAUUGCCACUCGACGAUGCACGACA--
..........(((((((..........(((........)))(((((..(((((....)))))...(....)...)))))...)))))))..-- ( -17.30)
>DroSec_CAF1 23476 91 + 1
UUCUAACAUAUUGUGCAAAUUCAUUAAGCCGAAACCCCGGCUCGAGACUUGAUUUUGAUCAAUUACAAUUGCCACUCGAAGAUGCACGACA--
..........(((((((..(((.(..(((((......)))))..)...(((((....)))))...............)))..)))))))..-- ( -22.00)
>DroSim_CAF1 19184 91 + 1
UUCUAGCAUAUUGUGCAAAUUCAUUAAGCCGAAACCCCGGCUCGAGACUUGAUUUUGAUCAAUUACAAUUGCCACUCGAAGAUGCACGACA--
..........(((((((..(((.(..(((((......)))))..)...(((((....)))))...............)))..)))))))..-- ( -22.00)
>DroEre_CAF1 16197 86 + 1
UUCU-----AUUGUGCAAAUUCAUUAAGCCGCAGCCCCGGCUCGAGACUUGAUUUUGAUCAAUUACAAUUGCCACUCGACGAUGAACGACA--
....-----..........((((((..((((......))))(((((..(((((....)))))...(....)...))))).)))))).....-- ( -14.90)
>DroYak_CAF1 6342 86 + 1
UUCU-----AUUGUGCAAAUUCAUUAAGCCGAAACCCCGGCUCGAGACUUGAUUUUGAUCAAUUACAAUUGCCACUCGACGAUGCACGACA--
....-----.(((((((..........((((......))))(((((..(((((....)))))...(....)...)))))...)))))))..-- ( -20.50)
>DroAna_CAF1 5890 88 + 1
UUCU-----AUUGUGCAAAUUCAUUAAGCCGAGACUCCGGCUUGAGGCUUGAUUUUGAUCAAUUACAAUUGCCACUUGACGGUGCACGACACG
....-----.(((((((...(((((((((((......))))))))((((((((....)))))........)))...)))...))))))).... ( -26.60)
>consensus
UUCU_____AUUGUGCAAAUUCAUUAAGCCGAAACCCCGGCUCGAGACUUGAUUUUGAUCAAUUACAAUUGCCACUCGACGAUGCACGACA__
..........(((((((..........((((......))))(((((...(((((.(((....))).)))))...)))))...))))))).... (-18.09 = -18.15 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:42 2006