Locus 723

Sequence ID 2R_DroMel_CAF1
Location 3,542,425 – 3,542,516
Length 91
Max. P 0.998330
window1276

overview

Window 6

Location 3,542,425 – 3,542,516
Length 91
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 75.57
Mean single sequence MFE -34.12
Consensus MFE -19.18
Energy contribution -21.82
Covariance contribution 2.64
Combinations/Pair 1.12
Mean z-score -2.76
Structure conservation index 0.56
SVM decision value 3.07
SVM RNA-class probability 0.998330
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3542425 91 + 20766785
GGCAUAUAA---------ACAUAAUCCAGCUGAUCUCGCCCCACUGUGCGGCUGUGCUCGGCUGCCCGGCUGCUGCGU---UCUGCCGGGUUGUUUUAUUUGA
..((.((((---------(.(((((((.((.((...(((..(((((.(((((((....))))))).))).))..))).---)).)).)))))))))))).)). ( -33.50)
>DroGri_CAF1 19618 93 + 1
GGGAAACCCUAUUUGUUUUUUUUAUUAG--CAA--UCGAACCACUGUGCAGCAGGGCGCUGCUCU-UGCCUGUAGCCUGUAGCUGCC-----GCUUUAUUUGA
((....))....(((((.........))--)))--(((((.....((((((((.((.(((((...-.....))))))).).)))).)-----))....))))) ( -24.40)
>DroSec_CAF1 16970 91 + 1
GGCAAAUAA---------ACAUAAUCCGGCUGAUCUCGCCCCACUGUGCGGCUGUGUUCGGCUGCCCGACUGCUGCGU---UCUGCCGGGUUGUUUUAUUUGA
..(((((((---------(.((((((((((.((...(((..((.((.(((((((....))))))).))..))..))).---)).)))))))))))))))))). ( -38.70)
>DroSim_CAF1 12612 91 + 1
GGCAAAUAA---------ACAUAAUCCGGCUGAUCUCGCCCCACUGUGCGGCUGUGUUCGGCUGCCCGACUGCUGCGU---UCUGCCGGGUUGUUUUAUUUGA
..(((((((---------(.((((((((((.((...(((..((.((.(((((((....))))))).))..))..))).---)).)))))))))))))))))). ( -38.70)
>DroEre_CAF1 9942 89 + 1
AGCAAAUAA---------ACAUAAUCCGGCUGAUCUCGCCCCACUGUGCGGCAU--UUCGGCUGCCCGACUGCUGCGU---UCUGCCGGGUUGUUUUAUUUGA
..(((((((---------(.((((((((((.((...(((..((.((.(((((..--....))))).))..))..))).---)).)))))))))))))))))). ( -35.30)
>consensus
GGCAAAUAA_________ACAUAAUCCGGCUGAUCUCGCCCCACUGUGCGGCUGUGUUCGGCUGCCCGACUGCUGCGU___UCUGCCGGGUUGUUUUAUUUGA
....................((((((((((.((...(((..((....(((((((....))))))).....))..)))....)).))))))))))......... (-19.18 = -21.82 +   2.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:40 2006