| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,523,049 – 3,523,160 |
| Length | 111 |
| Max. P | 0.597718 |
| Location | 3,523,049 – 3,523,160 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 74.61 |
| Mean single sequence MFE | -22.22 |
| Consensus MFE | -15.04 |
| Energy contribution | -14.85 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.597718 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3523049 111 - 20766785 UUACAA--------UGAUAAUGAAUUAUAUUCUCCUUUGGUUAGCAUCAAGGUUCUGCCCAGUCUUCUGUUUGAGAACCUCAACUCGCUGGAAACGCUGAACCUGCAGAACAACAAGUU ......--------...............((((.(...(((((((....((((((((..(((....)))..).))))))).........(....))))).))).).))))......... ( -21.30) >DroVir_CAF1 15189 102 - 1 ----AC-GUCUC-UCA---------CACAUU--UCAAUUUGUAGCAUCAAAGUUCUGCCCAGCACUCUAUUCGAGAAUCUCAACUCGCUGGAAACGUUGAAUCUGCAGAAUAACAAGUU ----..-.....-...---------......--....(((((((..((((.(((....(((((.........(((........)))))))).))).))))..))))))).......... ( -17.20) >DroSec_CAF1 426 107 - 1 UUAUUU--------CAAC----UAUUAUAUUCUCCUCUGCUUAGCAUCAAGGUUCUGCCCAGCCUUCUGUUCGAGAACCUGAACUCGCUGGAAACGCUGAACCUGCAGAACAACAAGCU ......--------....----.............(((((.........((((((.(((((((.....(((((......)))))..)))))....)).))))))))))).......... ( -25.30) >DroSim_CAF1 17823 107 - 1 UUACAU--------UAAC----UAUUAUAUUCUCCUUUGCUUAGCAUCAAGGUUCUGCCCAGUCUUCUGUUCGAGAACCUCAACUCGCUGGAAACGCUGAACCUGCAGAACAACAAGUU ......--------....----.............((((((((((....((((((((..(((....)))..).))))))).........(....))))))....))))).......... ( -21.70) >DroEre_CAF1 17129 115 - 1 UUACAAAGUAUCUGUAAC----AAUUAUAUUCCCCAAUUCCUAGCAUCAAGGUUCUGCCCAGUCUGCUCUUCGAGAACCUGAACUCCCUGGAAACGCUGAACUUGCAGAACAACAAGCU (((((.......))))).----....................(((......(((((((....((.((.....(((........)))...(....))).))....))))))).....))) ( -20.40) >DroPer_CAF1 419 99 - 1 AUCCGU--------UC---------UGCAUU--CCAA-UUUCAGCAUUAAGGUGCUGCCAAGUGUGCUGUUUGAGAACCUAAACUCGCUGGAGACCCUGAAUCUGCAGAACAACAAGCU ....((--------((---------((((((--((((-...((((((...((.....))....)))))).))).))).......(((..(....)..)))...))))))))........ ( -27.40) >consensus UUACAU________UAAC_____AUUAUAUUCUCCAAUGCUUAGCAUCAAGGUUCUGCCCAGUCUUCUGUUCGAGAACCUCAACUCGCUGGAAACGCUGAACCUGCAGAACAACAAGCU ..........................................(((......(((((((.((((........((((........))))..(....))))).....))))))).....))) (-15.04 = -14.85 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:17 2006