Locus 712

Sequence ID 2R_DroMel_CAF1
Location 3,502,406 – 3,502,519
Length 113
Max. P 0.998423
window1247

overview

Window 7

Location 3,502,406 – 3,502,519
Length 113
Sequences 4
Columns 114
Reading direction reverse
Mean pairwise identity 73.98
Mean single sequence MFE -27.38
Consensus MFE -20.23
Energy contribution -20.60
Covariance contribution 0.37
Combinations/Pair 1.06
Mean z-score -2.33
Structure conservation index 0.74
SVM decision value 3.10
SVM RNA-class probability 0.998423
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3502406 113 - 20766785
GAAUAAGAAGACCUUGCCAGUAGGCGUGGCUGCCUCGUCGCUGCCCGCCUGCAAAAUAAUUUAUGA-AAAUUAGGCUUAUUCUUACUCCACAGAUAAUAGAAUUAAUCCUUAAU
((.((((((......(((.(((((((.(((.((......)).))))))))))....((((((....-)))))))))...)))))).)).......................... ( -32.20)
>DroSec_CAF1 7109 91 - 1
AAACAAGAAGACCUUGCCAGUAGGCGUGGCCGCCUCGUCGCUGCCCGCCUGCAAAAUAAUUGGUUAAAUAUUAGGUUUAUU----------------------UCUGCACC-AC
.....(((((((((.(((((((((((.(((.((......)).))))))))))........))))........)))))...)----------------------))).....-.. ( -27.30)
>DroEre_CAF1 7131 91 - 1
AAACAAGAACACCUUUCCAGUAGGCGUGGCCGCCUCGUCGCUGCCCGCCUGCAAAAUAAUUAGGUAAACAUUAGGUUUGUU----------------------UCCGCACC-AC
...................(((((((.(((.((......)).))))))))))..........((.(((((.......))))----------------------))).....-.. ( -26.40)
>DroYak_CAF1 7079 91 - 1
AAACAAGAACACCUUGCCAGUAGGCGUGGCCGCUUCGUCGCUGCCAGCCUGCAAAUUAAGUAGAUAAAUAUUAGAUUUCUU----------------------UCCACACC-GC
...((((.....))))...((((((.((((.((......)).))))))))))(((((.((((......)))).)))))...----------------------........-.. ( -23.60)
>consensus
AAACAAGAACACCUUGCCAGUAGGCGUGGCCGCCUCGUCGCUGCCCGCCUGCAAAAUAAUUAGUUAAAUAUUAGGUUUAUU______________________UCCGCACC_AC
...((((.....))))...(((((((.(((.((......)).)))))))))).............................................................. (-20.23 = -20.60 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:13 2006