Locus 707

Sequence ID 2R_DroMel_CAF1
Location 3,478,040 – 3,478,142
Length 102
Max. P 0.747919
window1242

overview

Window 2

Location 3,478,040 – 3,478,142
Length 102
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 82.71
Mean single sequence MFE -28.38
Consensus MFE -20.45
Energy contribution -19.67
Covariance contribution -0.78
Combinations/Pair 1.26
Mean z-score -2.08
Structure conservation index 0.72
SVM decision value 0.47
SVM RNA-class probability 0.747919
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3478040 102 + 20766785
GAAGAGAGAACGUCGUGUAGCAUUUGCUCCAAAAUGUCUAUGCUGUUUGAUUUGGUUUGGCAAUUGUUACAUUGGUUUUCUUGUGGCU--GCGCUC-A---ACAGAAG
...((((((((...((((((((.(((((((((...(((..........)))))))...))))).))))))))..))))))))(((...--.)))..-.---....... ( -26.40)
>DroVir_CAF1 4981 104 + 1
AAAAAGAGAACGUCGUGUAGCAUUUGUUUCAAAAUGUUUUGAUUGUUGAAAUGGGUUUUGCAAAUGUUACAUUGGUUUUCUUAUGGUUGCGCUCUCCAACAACA----
...((((((((...(((((((((((((...((..(((((..(...)..)))))..))..)))))))))))))..))))))))...((((.......))))....---- ( -26.50)
>DroPse_CAF1 3563 102 + 1
GAAUAGAGAACGUCGUGUAGCAUUCGCUCCAAAAUGUUUUCGCUGUUUGAAUGGGUUUGGCGAUUGUUACAUUGGUUCUCUUGUGGUU--GCUCUC-A---ACAACAA
....(((((((...((((((((.(((((...((((.(.((((.....)))).).))))))))).))))))))..)))))))(((.(((--(....)-)---)).))). ( -31.00)
>DroGri_CAF1 5585 98 + 1
GAAAAGAGAACGUCGUGUAGCAUUUGUUUCAAAAUGUUGUAAUUGUUCAAAUGGGUUUUGCAAAUGUUACAUCGGUUUUCUUAUGGUU--GCUCUC-A---ACA----
...((((((((...(((((((((((((.........(((........))).........)))))))))))))..))))))))...(((--(....)-)---)).---- ( -25.57)
>DroMoj_CAF1 3559 100 + 1
GGAGAGAGAACGUCGUGUAGCAUUUGUUUCAAAAUGUUUGAAUUGUUGAAAUGGGUUUGGCAAAUGUUACAUUGGUUCUCUUAUGGGU-UGCUCUCCA---ACA----
(((((((((((...(((((((((((((..((((.(((((.(.....).)))))..)))))))))))))))))..))))))........-...))))).---...---- ( -29.80)
>DroPer_CAF1 3550 102 + 1
GAAUAGAGAACGUCGUGUAGCAUUCGCUCCAAAAUGUUUUCGCUGUUUGAAUGGGUUUGGCGAUUGUUACAUUGGUUCUCUUGUGGUU--GCUCUC-A---ACAACAA
....(((((((...((((((((.(((((...((((.(.((((.....)))).).))))))))).))))))))..)))))))(((.(((--(....)-)---)).))). ( -31.00)
>consensus
GAAAAGAGAACGUCGUGUAGCAUUUGCUCCAAAAUGUUUUAACUGUUUAAAUGGGUUUGGCAAAUGUUACAUUGGUUCUCUUAUGGUU__GCUCUC_A___ACA____
...((((((((...((((((((.(((((........((..........))........))))).))))))))..)))))))).......................... (-20.45 = -19.67 +  -0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:08 2006