Locus 706

Sequence ID 2R_DroMel_CAF1
Location 3,460,073 – 3,460,167
Length 94
Max. P 0.579046
window1241

overview

Window 1

Location 3,460,073 – 3,460,167
Length 94
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 80.35
Mean single sequence MFE -33.57
Consensus MFE -23.82
Energy contribution -24.43
Covariance contribution 0.62
Combinations/Pair 1.32
Mean z-score -1.23
Structure conservation index 0.71
SVM decision value 0.09
SVM RNA-class probability 0.579046
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3460073 94 - 20766785
AUUUUUCAGCGCCGGCUACAAAAGCGGAACUGGAGCUCAGCGAACUGCGAGGUCUGCGGCGUCCACAGGAUGCUGUUACCUUCGGUAGUCAGGC----
....(((((..(((.((.....)))))..)))))(((..((..((((.(((((..(((((((((...))))))))).))))))))).))..)))---- ( -36.10)
>DroSec_CAF1 11142 94 - 1
AUUUUUCAGCGCCGGCUACAAAAGCGGAACUGGAACUCAGUGAAUUGCGAGGACUGCGGCGUCCACAGGAUGCUGUUACCUUCGGAAGUCAGGC----
...((((((..(((.((.....)))))..)))))).....(((.((.(((((...(((((((((...)))))))))...))))).)).)))...---- ( -33.40)
>DroSim_CAF1 13960 94 - 1
AUUUUUCAGCGCCGGCUACAAAAGCGGAACUGGAGCUCAGUGAGCUGCGAGGACUGCGGCGUCCACAGGAUGCUGUUACCUUCGGUAGUCAGGC----
..........(((((((((....((((.((((.....))))...))))((((...(((((((((...)))))))))...)))).)))))).)))---- ( -39.20)
>DroEre_CAF1 10392 94 - 1
AUUUUUCAGCGCCGGCUACAAAAGCGGAACUGGAGCUCAGCGAACUGCGGGGACUGCGGCGUCCACAGGAUGCUGUUACCUUCGGUAGUCAGUC----
...((((((..(((.((.....)))))..))))))....((..(((((((((...(((((((((...)))))))))...)))).)))))..)).---- ( -32.70)
>DroYak_CAF1 10714 89 - 1
GUGUUUCAGUGCCGGCAACAAAAGCGGAACUUGAGCUUAGCGAACUGCGAGGACUGCGGCGUCCACAGGAUGCGGUUGCCUUCGGUAGU---------
.........((((((((((....((((..((((((.........)).))))..)))).((((((...)))))).))))))...))))..--------- ( -30.50)
>DroPer_CAF1 12965 95 - 1
ACCUCCCAGCUCCUGCUACCAAGGCGGAACUGGAGCUCAGCGAUCUGCGUC---GCCAGCAUGCACAAGAAGCGGGCGCCAACGCGCAACAGACCGAC
.((..((((.(((.(((.....)))))).)))).(((..(((((....)))---)).)))..((.......))))((((....))))........... ( -29.50)
>consensus
AUUUUUCAGCGCCGGCUACAAAAGCGGAACUGGAGCUCAGCGAACUGCGAGGACUGCGGCGUCCACAGGAUGCUGUUACCUUCGGUAGUCAGGC____
...((((((..((.(((.....)))))..))))))........(((((((((...((((((((.....))))))))...))))).))))......... (-23.82 = -24.43 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:07 2006