Locus 703

Sequence ID 2R_DroMel_CAF1
Location 3,453,461 – 3,453,571
Length 110
Max. P 0.544498
window1234

overview

Window 4

Location 3,453,461 – 3,453,571
Length 110
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 80.66
Mean single sequence MFE -30.69
Consensus MFE -20.14
Energy contribution -19.62
Covariance contribution -0.52
Combinations/Pair 1.48
Mean z-score -1.38
Structure conservation index 0.66
SVM decision value 0.02
SVM RNA-class probability 0.544498
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3453461 110 + 20766785
UGUGGUGUUUGGAUGC--CCGAUUUCGUAGACAGCCUGCCAAUAACUUGCCUAUGCACCUUUAUUGGCUGUUUUUUUUUAAUCGCCGAUAUGCAGUCGAUAGUGGGCGGCAA
..(((((.(((..(((--........)))..))).).))))......((((...((.((.(((((((((((....................))))))))))).)))))))). ( -28.65)
>DroSec_CAF1 4713 110 + 1
UGUGGUCUUUGGAUGC--CCGAUUUCGUAGACAGCUUGCCAAUAACUUGCCUAUGCACCUUUAUUGGCUGCUUUUUCUUAAUCGCCGAUAUGCAGUCGAUAGUGGGCGGCAA
.((.((((.((((...--.....)))).)))).)).((((.......(((....)))((.(((((((((((....((.........))...))))))))))).))..)))). ( -31.60)
>DroSim_CAF1 7929 110 + 1
UGUGGUCUUUGGAUGC--CCGAUUUAGUAGACAGCUUGCCAAUAACUUGCCUAUGCACUUUUAUUGGCUGCUUUUUCUUAAUCGCCGAUAUGCAGUCGAUAGUGGGCGGCAA
(((.(((....)))((--((((((.((.(((.(((..((((((((..(((....)))...)))))))).))).))))).))))..((((.....)))).....)))).))). ( -32.60)
>DroEre_CAF1 4426 110 + 1
UGUGAAUUUUUCAUGC--CAGAUUUCGUAGACAGCUUGCCAAUAGUUUGUCUAUGCACUUUUAUUGGCUGCUUCUUAUUAAUCUGCGAUAUGCAGUCGAUAGUGGGCGGCAA
.((((.....))))((--(.......((((((((((.......)).))))))))((.((.(((((((((((....((((.......)))).))))))))))).))))))).. ( -32.90)
>DroWil_CAF1 5531 109 + 1
UGGGUGCAUUUAAUCCUUCCAUUUUCUCAAAUA--UUGCC-AUUGCUUCGUUCGGCGCCCUGAUCGCCUGUUUCCUGCUCAUCUAUGACACUCAAUUGAUCAUGGGCGGCAA
.((((.......)))).................--(((((-...(((......)))((((((((((..((.....((.(((....)))))..))..)))))).))))))))) ( -27.20)
>DroYak_CAF1 4685 110 + 1
UGCGGUUUUUGGAUGC--CCGAUUUCGUAGACAGCUUGCCAAUAACUUGCCUAUGCACUUUUAUUGGCUGUUUUUUUUUAAUCGUCGAUAUGCAGUCGAUAGUGGGCGGCAA
(((.(((....)))((--((((((....(((.(((..((((((((..(((....)))...)))))))).))).)))...))))((((((.....))))))...)))).))). ( -31.20)
>consensus
UGUGGUCUUUGGAUGC__CCGAUUUCGUAGACAGCUUGCCAAUAACUUGCCUAUGCACCUUUAUUGGCUGCUUUUUCUUAAUCGCCGAUAUGCAGUCGAUAGUGGGCGGCAA
(((((...((((......))))..))))).......((((.......(((....)))((.(((((((((((....................))))))))))).))..)))). (-20.14 = -19.62 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:00 2006