Locus 702

Sequence ID 2R_DroMel_CAF1
Location 3,452,899 – 3,453,001
Length 102
Max. P 0.721652
window1233

overview

Window 3

Location 3,452,899 – 3,453,001
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 91.47
Mean single sequence MFE -26.52
Consensus MFE -21.78
Energy contribution -21.06
Covariance contribution -0.72
Combinations/Pair 1.16
Mean z-score -1.48
Structure conservation index 0.82
SVM decision value 0.40
SVM RNA-class probability 0.721652
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3452899 102 + 20766785
UCCAAAAGAUGGCGAACACUUGGUCGAAAAUGGGAUGAUUUCCCAUGAUUUGAUUGUUAAAAGUAAUGUAUUCGAGGAUCCCACUAUACGCAUGGGAUUCGU
.(((.....)))((((.((..(((((((.((((((.....))))))..)))))))((((....)))))).)))).((((((((.........)))))))).. ( -27.50)
>DroSec_CAF1 4151 102 + 1
UCCAAAAGAUGGAGAACACUUGGUCGAGAAUGGGAUUAUUACCCACGAUUUGAUUGUUAAAAGCAAUGUAUUCGAGGAUCCCGCUAUACGCAUGGGAUUCGU
.......(((.(((....))).))).....((((.......))))(((....(((((.....)))))....))).(((((((((.....))..))))))).. ( -25.40)
>DroSim_CAF1 7367 102 + 1
UCCAAAGGAUGGCGAACACUUGGUCGAAAAUGGGCUUAUUACCCACGAUUUGAUUGUUAAAAGCAAUGUAUUCGAGGAUCCCGCUAUACGCAUGGGAUUCGU
.(((.....)))((((.((..(((((....((((.......)))))))))..(((((.....))))))).)))).(((((((((.....))..))))))).. ( -24.40)
>DroEre_CAF1 3860 102 + 1
UCUAAAAGAUGGCGAUCAAUUGAUCGAAAGUGGGAUUAUUUCCCAUGAUCUAAUUGUUAAAAGCAAUGUAUUCGAGGAUCCCACUAUUCGAAUGGGAUUCGU
......((((..(((((....)))))...((((((.....)))))).)))).(((((.....)))))........((((((((.........)))))))).. ( -29.10)
>DroYak_CAF1 4123 102 + 1
UCCAAAAGAUGGCGAACAGUUGAUCGAAAAUGGGAUUAUUACCCAAGAUCUGAUUGUUAAAAGCAAUGUAUUCGAGGAUCCCACUAUACGCAUGGGAUUCGU
...........((.(((((((((((.....((((.......)))).)))).)))))))....))...........((((((((.........)))))))).. ( -26.20)
>consensus
UCCAAAAGAUGGCGAACACUUGGUCGAAAAUGGGAUUAUUACCCACGAUUUGAUUGUUAAAAGCAAUGUAUUCGAGGAUCCCACUAUACGCAUGGGAUUCGU
.(((.....)))...........(((((..((((.......)))).......(((((.....)))))...)))))((((((((.........)))))))).. (-21.78 = -21.06 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:59 2006