Locus 701

Sequence ID 2R_DroMel_CAF1
Location 3,444,754 – 3,444,846
Length 92
Max. P 0.712536
window1232

overview

Window 2

Location 3,444,754 – 3,444,846
Length 92
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 77.66
Mean single sequence MFE -28.17
Consensus MFE -18.83
Energy contribution -18.78
Covariance contribution -0.05
Combinations/Pair 1.38
Mean z-score -1.34
Structure conservation index 0.67
SVM decision value 0.38
SVM RNA-class probability 0.712536
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3444754 92 - 20766785
CGACUGUCCUGAAUUUGACGGUGUUCCUGAUCAUGUCUUUGUUCAUACCGCCUACCCGAGCU------AUAGCCGGGAUAAUGGUGGUAGCCUUGACU
.....(((.(((((..((((.((........))))))...)))))(((((((..((((.((.------...)))))).....))))))).....))). ( -28.60)
>DroSec_CAF1 289 92 - 1
CGGCCGUCCUGAAUUUGACGGUGUUCCUGAUCAUGUCUUUGUUCAUACCGCCUACCUGAGCU------AUAGCCGGGAUAAUGGUGGUAGCCUUGACU
.(((.....(((((..((((.((........))))))...)))))(((((((..((((.((.------...)))))).....))))))))))...... ( -29.00)
>DroSim_CAF1 427 92 - 1
CGGCCCUCCGGAAUUUGACGGUGUUCCUGAUCAUGUCUUUGUUCAUACCGCCUACCCGAGCU------AUAGCCGGGAUAAUGGUGGUAGCCUUGACU
.(((......((((..((((.((........))))))...)))).(((((((..((((.((.------...)))))).....))))))))))...... ( -30.60)
>DroEre_CAF1 427 92 - 1
CGGGUCUCCUGAAUAUGACGGUGUUCCUGAUCAUGUCUCUGUUCGUACCGUCUUCCCGAGCU------AUAGCCAGGAUAAUGGUGGUAGCCUUGACU
((((((....))....(((((((....(((.((......)).))))))))))..)))).(((------((.((((......)))).)))))....... ( -26.50)
>DroYak_CAF1 430 92 - 1
CGGGCCUCCUGAAUAUGACGGUGUUCCUGAUCAUGUCUCUGUUCAUACCGCCUUCCCGAGCU------AUGGCCGGGAUAAUGGUGGUAGCCUUGACU
.((((....((((((.((((.((........))))))..))))))(((((((.(((((.((.------...)))))))....)))))))))))..... ( -34.70)
>DroAna_CAF1 385 84 - 1
--------------AUGACGUGAUUCGUAUCCAUGUCGAGAUUCGUAUCUCUUAUUGUAGCUUUGGUUGUAGUUCGAGUAAUGGUGAUAGCCCUGGUU
--------------..((((((.........))))))(((((....))))).......((((..((((((....(.(....).)..))))))..)))) ( -19.60)
>consensus
CGGCCCUCCUGAAUAUGACGGUGUUCCUGAUCAUGUCUUUGUUCAUACCGCCUACCCGAGCU______AUAGCCGGGAUAAUGGUGGUAGCCUUGACU
..........((((..((((.((........))))))...)))).(((((((..((((.(((........))))))).....)))))))......... (-18.83 = -18.78 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:58 2006