| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,434,273 – 3,434,383 |
| Length | 110 |
| Max. P | 0.910004 |
| Location | 3,434,273 – 3,434,383 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 77.05 |
| Mean single sequence MFE | -27.98 |
| Consensus MFE | -18.64 |
| Energy contribution | -18.03 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.67 |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.910004 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3434273 110 - 20766785 UAUAG--CCUUAAACAUUCGAAACUUUAGAUGUUCGGACACUUUAAGCUCGUCUAUCCGGCUCCUAUAUCGGAGCCCAUACAGUCUAGGGAUUCGAAUGCAUACAUGAUGGA .....--.......((((((((.((((((((....((((...........))))....((((((......))))))......)))))))).))))))))............. ( -32.00) >DroSec_CAF1 12993 110 - 1 CAUAG--CCUUAAACAUUCGAAACUAAAGAUGUUCGGACACUUUAAGCUCAUCUAUCCGGCUCCUAUAUCGGAGCCUAUACGGUCUAGGGACUCGAAUGCAUAUAUGUUGGA ..(((--(..((..(((((((..((..((((....(((.................)))((((((......))))))......))))..))..)))))))..))...)))).. ( -26.13) >DroSim_CAF1 10715 110 - 1 UAUAG--CCUUAAACAUUCGAAACAAAAGAUGUUCGGACACUUUAAGCUCAUCUAUCCGGCUCCUAUAUCGGAGCCUAUACGGUCUAGGGACUCGAAUGCAUAUAUGAUGGA ...((--(.(((((..((((((.((.....))))))))...))))))))..((((((.((((((......))))))....(((((....))).))...........)))))) ( -28.90) >DroEre_CAF1 13047 110 - 1 CAUAG--CCUUAACCAUUUAAUAUCAUAGAUGUUCCGACACUUUAAGCUUAUCUAUCCGGUUCCUUUAUCGGAGCCUAUGAGAUCUAGGGACUCGAAUGCAUUUCUAAAGGA .....--((((...((((((......))))))...(((..(((((..(((((...((((((......))))))....)))))...)))))..)))............)))). ( -21.00) >DroYak_CAF1 8080 110 - 1 UAAAG--CCUCAGACAUUUGAAAUUAUAGAUGUUCGGAAAUUUUAAGCUUAUCUAUCCGGCUCCUCUAUCGGAGCCUAUAAGAUCUAGGGAUUCGAAUGCAUUUCUAAUGGU ....(--((..(((((((((((.(..(((((.((.(((.................)))((((((......))))))...)).)))))..).))))))))....)))...))) ( -27.93) >DroPer_CAF1 8515 100 - 1 AGAAGCAGCUUAAACGUUUGAAA------AUGUUC------UUCAAACUUGUGUACCCGGCUCCGCUGUCGGAGCCAAUCGGGACGAGGGAUUCUACUGUUUACUUGCUCAA .((.((((..((((((((((((.------......------))))))).......((((((((((....)))))))..(((...))))))........))))).)))))).. ( -31.90) >consensus UAUAG__CCUUAAACAUUCGAAACUAUAGAUGUUCGGACACUUUAAGCUCAUCUAUCCGGCUCCUAUAUCGGAGCCUAUACGGUCUAGGGACUCGAAUGCAUAUAUGAUGGA ..............(((((((......(((((.................))))).(((((((((......))))))..((.....)))))..)))))))............. (-18.64 = -18.03 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:57 2006