Locus 7

Sequence ID 2R_DroMel_CAF1
Location 847,722 – 847,842
Length 120
Max. P 0.605732
window16

overview

Window 6

Location 847,722 – 847,842
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.69
Mean single sequence MFE -36.33
Consensus MFE -25.75
Energy contribution -25.38
Covariance contribution -0.38
Combinations/Pair 1.24
Mean z-score -1.58
Structure conservation index 0.71
SVM decision value 0.15
SVM RNA-class probability 0.605732
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 847722 120 + 20766785
UGAUGAGCAUAUAGUGCCCGUUCACAAGAAAUAGCUAACUCGGUAAUGCAGUAGUAUUUGGCUUCGGCAAGCAAUUCUGCAAUUUCCUUGUUAGUUUCUGGUAAUGGAACAGUGCCAUCU
.((((.((((...((..(((((.((.((((...((((((..((...(((((.(((.....((....)).....))))))))....))..)))))))))).))))))).)).)))))))). ( -37.30)
>DroSim_CAF1 587 120 + 1
UGAUGCGCAUAUAGUGCCCGUUCACAAGAAAUAGCUAACUCGGUAAUGCAGUAGUAUUUGGCUUCGGCAAGCAAUUCUGCAAUUUCCUUGUUAGUUUCGGGUAACGGGACAGUGCCAUCU
.((((.((((...((.((((((.((..(((...((((((..((...(((((.(((.....((....)).....))))))))....))..)))))))))..)))))))))).)))))))). ( -42.10)
>DroYak_CAF1 35278 120 + 1
UGAUGCGCAUAUAGCGCUCGUUCACAAGAAAUAGCUAACUCGGUAAUGCAGUAGUAUUUGGCUUCGGCAAGCAAUUCAGCAAUUUCCCUGUUAGUUUCGGGUAACGGAACAGUACCAUCU
.(((((((.....))))(((((.((..(((...((((((..((...(((.(.(((.....((....)).....)))).)))....))..)))))))))..))))))).........))). ( -28.30)
>DroMoj_CAF1 2667 120 + 1
UGGUGCGUAUACAGUGCACGCUCGCAUGACAUCGCCAGCUCUGUGAUGCAGUAGUAUUUUGCUUCGGCGAGCAGCUCGGCAAUCUCUUUGUUCGUCUCUGGCAGCGGUACACUGCCAUCU
..(((((.......)))))(((.((........)).))).....((((((((.((((((((((..(((((((((.............)))))))))...))))).))))))))).)))). ( -37.62)
>consensus
UGAUGCGCAUAUAGUGCCCGUUCACAAGAAAUAGCUAACUCGGUAAUGCAGUAGUAUUUGGCUUCGGCAAGCAAUUCUGCAAUUUCCUUGUUAGUUUCGGGUAACGGAACAGUGCCAUCU
.((((.((((...((.(.((((.((..(((...((((((..((.(((((((.(((.....((((....)))).))))))).))).))..)))))))))..))))))).)).)))))))). (-25.75 = -25.38 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:14 2006