Locus 698

Sequence ID 2R_DroMel_CAF1
Location 3,423,450 – 3,423,549
Length 99
Max. P 0.877137
window1229

overview

Window 9

Location 3,423,450 – 3,423,549
Length 99
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 89.90
Mean single sequence MFE -35.23
Consensus MFE -29.64
Energy contribution -30.53
Covariance contribution 0.90
Combinations/Pair 1.15
Mean z-score -2.55
Structure conservation index 0.84
SVM decision value 0.90
SVM RNA-class probability 0.877137
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3423450 99 + 20766785
AAAAGCUGAACCCGUAUUUGGGGGGCACACGGCGUAUGCGGUAUAUGCGAUAUAUGCGAUGUGUUUCAAGGCCGGGUUGAGCGGGAAUUUACAGCCAGU
....(((.((((((..((((((..(((((..(((((((((.......)).)))))))..)))))))))))..)))))).)))((..........))... ( -34.80)
>DroSim_CAF1 58735 99 + 1
AAAAGCUGAGCCCGUAUUUGGGGGGCACACGGCGUAUGCGUUAUAUGCGCUAUAUGCGAUGUGUUUCAAGGCCGGGUUGAGCGGGAAUUUACAGCCAGU
....(((.((((((..((((((..(((((..((((((((((.....)))).))))))..)))))))))))..)))))).)))((..........))... ( -39.00)
>DroYak_CAF1 57049 94 + 1
AAAAGCUGAACCCGUAUUUGGGGGGCACACGGCGUAUGCGAUAUGUU---UGUAUGCGAUGUGUUUCAAGGUUGGACUGAGCGGGAAUUUACAGCCA--
....(((((((((((......(..(((((...(((((((((.....)---)))))))).)))))..).((......))..)))))...)).))))..-- ( -31.90)
>consensus
AAAAGCUGAACCCGUAUUUGGGGGGCACACGGCGUAUGCGAUAUAUGCG_UAUAUGCGAUGUGUUUCAAGGCCGGGUUGAGCGGGAAUUUACAGCCAGU
....(((.((((((.......(..(((((..((((((((((.....))).)))))))..)))))..).....)))))).)))((..........))... (-29.64 = -30.53 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:55 2006