Locus 693

Sequence ID 2R_DroMel_CAF1
Location 3,407,768 – 3,407,858
Length 90
Max. P 0.811659
window1221

overview

Window 1

Location 3,407,768 – 3,407,858
Length 90
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 79.43
Mean single sequence MFE -36.68
Consensus MFE -22.12
Energy contribution -23.18
Covariance contribution 1.06
Combinations/Pair 1.26
Mean z-score -1.96
Structure conservation index 0.60
SVM decision value 0.65
SVM RNA-class probability 0.811659
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3407768 90 + 20766785
UUGGCUCCACG-GGA-GGGCAGGGGCAGCU--------CACUGGAGCAGCUGUUGGCAGCGCGUCGAGUUCCUCUUGGUGUGCAUGCAUAAUUGGCGGCC
..(((((((((-(((-((((.((.((.(((--------(....)))).((((....)))))).))..).)))))))).((((....))))..))).)))) ( -37.10)
>DroSec_CAF1 37935 90 + 1
UUAGCUCCAGU-AAA-GGGCAGGGGCAGCU--------CACUGGAGUAGCUGUUGGCAGCGCGUCGAGUUCCUCUUGAUGUGCAUGCAUAAUUGGCGGCC
...((((((((-...-((((.......)))--------))))))))).((((((.(((((((((((((.....)))))))))).)))......)))))). ( -39.70)
>DroSim_CAF1 37286 90 + 1
UUAGCUCCAGU-GGA-GGGCAGGGGCAGCU--------CAGUGGAGCAGCUGUUGGCAGCGCGUCGAGUUCCUCUUGAUGUGCAUGCAUAAUUGGCGGAC
...((((((.(-((.-..((....))...)--------)).)))))).((((((((((((((((((((.....)))))))))).))).))).)))).... ( -38.70)
>DroEre_CAF1 38470 90 + 1
UUAGCUCCAGU-GGA-GGGCAGGGGAAGCU--------CCGUGGAGCAGCUGUUGGCAGCGCGUCGAGUUCCUCUUGAUGUGCAUGCAUAAUUGGCGGCC
...((((((.(-(((-(...........))--------))))))))).((((((.(((((((((((((.....)))))))))).)))......)))))). ( -40.40)
>DroYak_CAF1 41495 90 + 1
UAAGCUCCAGU-GGA-GGGCAGGGGAAGCU--------CCGUGGAGCAGCUGUUGGCUGCGCGUCGAGUUCCUCUUGAUGUGCAUGCAUAAUUGGCGGCC
...((((((.(-(((-(...........))--------))))))))).((((((.(((((((((((((.....))))))))))).))......)))))). ( -40.40)
>DroPer_CAF1 39567 94 + 1
UUAACUAUGGCUGGAACUGGAGCCAAAGCUGCAUACGGCAGUGGAGCACU----CGAAAAGC--GGAGUUCCUCUUCAUAUGCAUCCGUAAUUACAGAGC
....((.(((((........))))).)).((((((.((.((.(((((.(.----((.....)--)).))))).)))).))))))................ ( -23.80)
>consensus
UUAGCUCCAGU_GGA_GGGCAGGGGAAGCU________CAGUGGAGCAGCUGUUGGCAGCGCGUCGAGUUCCUCUUGAUGUGCAUGCAUAAUUGGCGGCC
...((((((...........((......))...........)))))).((((((.(((((((((((((.....)))))))))).)))......)))))). (-22.12 = -23.18 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:48 2006