| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,402,079 – 3,402,173 |
| Length | 94 |
| Max. P | 0.901542 |
| Location | 3,402,079 – 3,402,173 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 86.29 |
| Mean single sequence MFE | -25.18 |
| Consensus MFE | -20.50 |
| Energy contribution | -22.25 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.81 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.901542 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3402079 94 - 20766785 ACACACACACACACACGUUCCUUGCUGUUUCGCGC----UGCUCUUGCGAUUUCUGCACUCUU-UUUGUGCUUC-GCCGCGAAAUUGUGUCAGAAUAGCA ......................((((((.(((((.----......)))))..(((((((...(-((((((....-..)))))))..))).)))))))))) ( -22.30) >DroSec_CAF1 32435 90 - 1 ---CACACACACGCGCGUUUCUCGCUGUUUCGCGC----UGCUCUUGCGAUUUCUGCACUCUU-UUUG-GCUUC-GCCGCGAAAUUGUGUCAGAAUAGCA ---.........(((((...(.....)...)))))----......(((...((((((((..((-((((-((...-)))).))))..))).)))))..))) ( -25.60) >DroEre_CAF1 32759 86 - 1 ---UACACAC----ACGUUUCUCGCUGCUUUGCGC----UGCUCUUGCGGUUUCUGCACUC---UUUGUGCUUCUGCCGCGAAAUUGUGUCAGAAUAGCA ---.......----.........((((.(((((((----.....(((((((....((((..---...))))....)))))))....))).)))).)))). ( -28.20) >DroYak_CAF1 35777 92 - 1 ---CACACAC----ACGUUUCUCGCUGUUUUGCGCUCACUGCUCUUGCGGUUUCUGCACUCUUCUUUGAGCUUC-GCCGCGAAAUUGUGUCAGAAUAGCA ---.......----.........(((((((((....(((.....(((((((....((.(........).))...-)))))))....))).))))))))). ( -24.60) >consensus ___CACACAC____ACGUUUCUCGCUGUUUCGCGC____UGCUCUUGCGAUUUCUGCACUCUU_UUUGUGCUUC_GCCGCGAAAUUGUGUCAGAAUAGCA .......................((((((((((((.........(((((((....((((........))))....)))))))....))).))))))))). (-20.50 = -22.25 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:40 2006