| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,400,463 – 3,400,563 |
| Length | 100 |
| Max. P | 0.508860 |
| Location | 3,400,463 – 3,400,563 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 76.46 |
| Mean single sequence MFE | -26.55 |
| Consensus MFE | -21.61 |
| Energy contribution | -21.36 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.81 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.508860 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3400463 100 - 20766785 GUUAAUUUUCUCCUUAAUGGCUCCAUAGCCAGAUUUGUGCCCUCCAAAAUCGAUGGCAUCACUGCAGUCGGCGAUGGUAUUUUGUUUGGCUGCUCCGACU---------- (((........((.....)).....(((((((((..(((((.((.....(((((.(((....))).))))).)).)))))...)))))))))....))).---------- ( -25.60) >DroSec_CAF1 30657 93 - 1 GU-------CUCCUCCAUGGUUCCCUAGCCAGAUUUGUGCCCUCCAAAAUCGAUGGCAACACUGCAGUCGGCGAUGGUAUUUUGUUUGGCUGCUCCGACU---------- ((-------(.((.....)).....(((((((((..(((((.((.....(((((.(((....))).))))).)).)))))...)))))))))....))).---------- ( -27.90) >DroEre_CAF1 31135 82 - 1 -----------------CGCCGCCCUAGCCAGAUUUGU-GCCUCCAAAACCGAUAGCAUCACUGCAGUCGGCGAUGGAAUUUUGUUUGGCUGCUCCGACU---------- -----------------...((...(((((((((....-...((((...(((((.(((....))).)))))...)))).....)))))))))...))...---------- ( -25.60) >DroYak_CAF1 34170 93 - 1 -----------------UGCCACGCUAGCCAGAUUUUUGGCCCCCAAAACCGAUGGCAUCACUGCAGUCGGCGAUGGAAUUUUGUUUGGCUGCUCCGACUCUCCGUCUCU -----------------.((((.((..(((((....)))))..(((...(((((.(((....))).)))))...)))......)).))))......(((.....)))... ( -27.10) >consensus _________________UGCCUCCCUAGCCAGAUUUGUGCCCUCCAAAACCGAUGGCAUCACUGCAGUCGGCGAUGGAAUUUUGUUUGGCUGCUCCGACU__________ .........................(((((((((.........(((...(((((.(((....))).)))))...)))......))))))))).................. (-21.61 = -21.36 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:39 2006