| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,399,225 – 3,399,333 |
| Length | 108 |
| Max. P | 0.561079 |
| Location | 3,399,225 – 3,399,333 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 81.87 |
| Mean single sequence MFE | -25.87 |
| Consensus MFE | -15.80 |
| Energy contribution | -16.13 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.561079 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3399225 108 + 20766785 CAGAAGCAUAAUUUUUUAUUGAUUGGAUUUCAGUGAAAAUCACUUCCGGCGAUAAAUUUGUUAUGCAGGCAGCGAUUC--GUUCAGUUAUGUAUGUCCUGGCAUUGGCUU .....(((((((..(((((((.(((((....((((.....))))))))))))))))...))))))).(.(((.(((.(--((......)))...)))))).)........ ( -29.00) >DroVir_CAF1 38125 91 + 1 CAGCAGCAUAAUUUUUUAUUGAUUGGAUUUCAGCGAAAAUCACUUCCGGCGAUAAAUUUGUUAUGCAGCCGCCGCA------CUG---AUG---GGCCAGGCU------- .....(((((((..(((((((.(((((....((.(.....).))))))))))))))...)))))))(((((((.((------...---.))---)))..))))------- ( -26.00) >DroPse_CAF1 28743 101 + 1 CAGUAGCAUAAUUUUUUAUUGAUUGGAUUUCAGCGAAAAUCACUUCCGGCCAUAAAUUUGUUAUGCAGCCAUCGGCUUUUCUCUGACUCUG---GCUCUGGCUC------ .....(((((((..(((((.(.(((((....((.(.....).)))))))).)))))...)))))))(((((..((((.............)---))).))))).------ ( -22.62) >DroYak_CAF1 32997 98 + 1 CAGUAGCAUAAUUUUUUAUUGAUUGGAUUUCAGUGAAAAUCACUUCCGGCGAUAAAUUUGUUAUGCAGGCAGCGAUUC--GUUCGGUUAU----GCCCUGGCUU------ (((..(((((((..(((((((.(((((....((((.....))))))))))))))))...))))))).((((.(((...--..)))....)----))))))....------ ( -30.30) >DroAna_CAF1 29224 99 + 1 CAGUAGCAUAAUUUUUUAUUGAUUGGAUUUCAGUGAAAAUCACUUCCGGCGAUAAAUUUGUUAUGCAGGCAACGAUUC-CGUUUGGUUAU----GUCCUGGCUU------ .....(((((((..(((((((.(((((....((((.....))))))))))))))))...)))))))((((...(((.(-(....))....----)))...))))------ ( -26.30) >DroPer_CAF1 28737 101 + 1 CAGUAGCAUAAUUUUUUAUUGAUUGGAUUUCAGCGAAAAUCACUUCCGGCCAUAAAUUUGUUAUGCAGCCAUCGGCUUUUCUCUGACUCUG---ACUCUGGCUC------ .....(((((((..(((((.(.(((((....((.(.....).)))))))).)))))...)))))))(((((((((..((.....))..)))---)...))))).------ ( -21.00) >consensus CAGUAGCAUAAUUUUUUAUUGAUUGGAUUUCAGCGAAAAUCACUUCCGGCGAUAAAUUUGUUAUGCAGCCAGCGAUUC__GUCUGGUUAUG___GCCCUGGCUU______ .....(((((((..(((((((.(((((.................))))))))))))...)))))))............................................ (-15.80 = -16.13 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:38 2006