Locus 681

Sequence ID 2R_DroMel_CAF1
Location 3,364,425 – 3,364,516
Length 91
Max. P 0.616721
window1204

overview

Window 4

Location 3,364,425 – 3,364,516
Length 91
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 79.39
Mean single sequence MFE -28.30
Consensus MFE -16.07
Energy contribution -16.24
Covariance contribution 0.17
Combinations/Pair 1.19
Mean z-score -1.79
Structure conservation index 0.57
SVM decision value 0.17
SVM RNA-class probability 0.616721
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3364425 91 + 20766785
-------------CCUCGCAUUUUACGAGUU---------GCGACUUCGUGAAAUGCAGAAAUGUUUCUAAUUGGGCGUUGAUUUACGACACGAUCUCUG--AGACAAGAGACCG
-------------.((((((((((((((((.---------...)).))))))))))).....((((((..((((..(((......)))...))))....)--))))).))).... ( -28.20)
>DroPse_CAF1 6112 100 + 1
----------AG-CCUCCCAUUUUACGAGUAGCGCCAG-CGCCAGUUCGUGAAAUGCAAAAAUGUUUCUAAUUGGGCGUUGAUUUACGACACGAUCCCUG--AGGCAAGAGAA-G
----------.(-((((.(((((((((((..(((....-)))...))))))))))).................(((.((((..........))))))).)--)))).......-. ( -28.70)
>DroWil_CAF1 7045 103 + 1
UUUGGGACAGAAUUUCCGCAUUUUACGAGU----------GCUA-UUCGUGAAAUGCAAAAAU-UUUCUAAUUGGGCGUUGAUUUACGACACGAUCUCUGUGAGUCAUGAAUUUG
.((((((...(((((..(((((((((((((----------...)-))))))))))))..))))-)))))))........(((((((((..........)))))))))........ ( -25.00)
>DroYak_CAF1 5132 93 + 1
-------------CCUCGCUUUUUACGAGUUGC----GUUGCGACUUCGUGAAGUGCAGAAAUGUUUCUAAUUGGGCGUUGAUUUACGACACCAUCUCCG--AGACAAGAGA---
-------------.(((((.(((((((((((((----...))))).)))))))).)).....((((((......((.((((.....)))).))......)--))))).))).--- ( -30.90)
>DroAna_CAF1 4374 95 + 1
-------------CUUCGCAUUUUACGAGUUGC--CAGUUGCGAGUUCGUGAAAUGCAAAAAUGUUUCUAAUUGGGCGUUGAUUUACGACACGAUCUCUG--AGACAAGAGU---
-------------.(((((((((((((((((((--.....)))).)))))))))))).....((((((..((((..(((......)))...))))....)--))))).))).--- ( -29.60)
>DroPer_CAF1 4879 100 + 1
----------AG-CCUCCCAUUUUACGAGUAGCGCCAG-CGCCAGUUCGUGAAAUGCAAAAAUGUUUCUAAUUGGGCGUUGAUUUACGACACGAUCCCUG--AGACAAGAGAA-G
----------..-.(((.(((((((((((..(((....-)))...)))))))))))......((((((..((((..(((......)))...))))....)--))))).)))..-. ( -27.40)
>consensus
_____________CCUCGCAUUUUACGAGUUGC____G__GCGAGUUCGUGAAAUGCAAAAAUGUUUCUAAUUGGGCGUUGAUUUACGACACGAUCUCUG__AGACAAGAGA__G
..............(((((((((((((((................)))))))))))).....(((((......(((.((((.....)))).....)))....))))).))).... (-16.07 = -16.24 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:32 2006