Locus 68

Sequence ID 2R_DroMel_CAF1
Location 1,321,453 – 1,321,572
Length 119
Max. P 0.866998
window130

overview

Window 0

Location 1,321,453 – 1,321,572
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.65
Mean single sequence MFE -28.82
Consensus MFE -23.22
Energy contribution -23.50
Covariance contribution 0.28
Combinations/Pair 1.04
Mean z-score -2.10
Structure conservation index 0.81
SVM decision value 0.85
SVM RNA-class probability 0.866998
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1321453 119 - 20766785
CAACAUAGUUAUGUCGUUGCAUAUUGGCGAUGAUUUCUGCACAUUGGCGCAAUUAUUGCCUGUUUAUGCUAAUUAAAAAUCAAUGGGAAGUGCCAUCGCGAUGUCAUU-UUCCCCACUCA
..((((....))))....(((((..((((((((((..(((......))).))))))))))....)))))...............((((((((.(((....))).))))-))))....... ( -29.50)
>DroSec_CAF1 39963 119 - 1
CAACAUAAUUAUGUCGUUGCAUAUUGGCGAUGAUUUCUGCACAUUGCCGCAAUUAUUGCCUGUUUAUGCUAAUUAAAAAUCAAUGGCAAGUGCCAUCGCGAUGCCAUU-UUCCCCACUCA
............(((((.(((((..((((((((((.(.((.....)).).))))))))))....))))).............(((((....))))).)))))......-........... ( -30.10)
>DroSim_CAF1 19068 119 - 1
CAACAUAAUUAUGUCGUUGCAUAUUGGCGAUGAUUUCUGCACAUUGCCGCAAUUAUUGCCUGUUUAUGCUAAUUAAAAAUCAAUGGCAAGUGCCAUCGCGAUGCCAUU-UUCCCCACUCA
............(((((.(((((..((((((((((.(.((.....)).).))))))))))....))))).............(((((....))))).)))))......-........... ( -30.10)
>DroEre_CAF1 21395 118 - 1
CAACAUAAUUAUGUCGUUGCAUAUUGGCGAUGAUUUCUGCACAUUGCCGCAAUUAUUGCCUGUUUAUGCUAAUUAAAAAUCAAUGGGAAGUGC-AUCGCGAUGCCAUU-UUCCCCACUCA
..((((....))))....(((((..((((((((((.(.((.....)).).))))))))))....)))))...............((((((.((-((....))))...)-)))))...... ( -30.70)
>DroYak_CAF1 7451 120 - 1
CAACAUAAUUAUGUCGUUGCAUAUUGACGAUGAUUUCUGCACAUUGCCGCAAUUAUUGUCUGUUUAUGCUAAUUAAAAAUCAAUAGGAAGUGCCAUCGCGAUGUCAUUUUUCCCCACUCA
......(((.(((((((.(((((..((((((((((.(.((.....)).).))))))))))....)))))................((.....))...))))))).)))............ ( -23.70)
>consensus
CAACAUAAUUAUGUCGUUGCAUAUUGGCGAUGAUUUCUGCACAUUGCCGCAAUUAUUGCCUGUUUAUGCUAAUUAAAAAUCAAUGGGAAGUGCCAUCGCGAUGCCAUU_UUCCCCACUCA
............(((((.(((((..((((((((((.(.((.....)).).))))))))))....))))).............((((......)))).))))).................. (-23.22 = -23.50 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:26 2006