| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,348,858 – 3,348,978 |
| Length | 120 |
| Max. P | 0.732219 |
| Location | 3,348,858 – 3,348,978 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.00 |
| Mean single sequence MFE | -47.73 |
| Consensus MFE | -35.30 |
| Energy contribution | -34.92 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.732219 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3348858 120 - 20766785 UAGACUUUGGAGAUCGGCUCAUCGAGGUAAUUGGGCUGGAGAACUGCCUGCACAUGGGCCAGGUGAGGACUGGACUUCGCGCGUCGGGACGCCGCCUGGCCCAGUGCAGCGAAGUGAUCA ...((((((....((((((((..........))))))))........((((((.((((((((((((((......))))(.((((....)))))))))))))))))))))))))))..... ( -54.50) >DroVir_CAF1 9449 120 - 1 CAGAUUUUGGGGAUCGUCUGAUCGAGGUAAUUGGCCUAGAGAAUUGCCUGCACAUGGGUCAAGUGCGAACGGGUCUGCGUGCUUCCGGUCGCCGAUUGGCUCAGUGCAGCGAGGUCAUCA ..(((((((..((((....)))).((((((((.........))))))))((((.((((((((..((((.((((...(....).)))).))))...))))))))))))..))))))).... ( -43.40) >DroGri_CAF1 3845 119 - 1 -AGAUUUUGGCGAUCGUCUGAUCGAGGUUAUUGGCUUGGAGAAUUGCCUGCACAUGGGUCAGGUGCGGACCGGCCUACGUGCCUCGGGUCGCCGUUUGGCGCAGUGCAGCGAGGUCAUCA -.((((((((((((..((..(((((.....)))).)..))..)))))((((((.((((((.(((....))))))))).(((((.(((....)))...))))).))))))))))))).... ( -48.60) >DroWil_CAF1 9280 120 - 1 UAGACAUCGGCGAUCGUCUGAUUGAGGUAAUUGGCUUGGAGAACUGUUUGCAUAUGGGUCAAGUGCGUACUGGGUUGCGGGCCUCCGGACGACGUUUGGCCCAAUGCAGUGAGGUGAUUA ....(((((.((((..(((.....)))..)))).)............((((((.((((((((((((((.(((((.........)))))))).)))))))))))))))))...)))).... ( -38.20) >DroMoj_CAF1 4398 120 - 1 CAGAUUUCGGUGAUCGCUUGAUAGAGGUAAUUGGCUUGGAGAAUUGUCUGCAUAUGGGUCAGGUGCGCACAGGUUUGCGCGCUUCGGGUCGUCGCUUGGCCCAGUGCAGCGAGGUGAUUA ..........((((((((......((((.....))))......(((.((((((.(((((((((((((((......))))).(....)......))))))))))))))))))))))))))) ( -42.80) >DroAna_CAF1 3009 120 - 1 UAGAUAUUGGAGAUCGCCUAAUCGAGGUAAUUGGCCUGGAGAAUUGCCUGCACAUGGGCCAGGUGAGAACUGGUUUGCGAGCCUCCGGACGCCGCCUGGCCCAGUGCAGCGAGGUGAUCA ...........(((((((...((.((((.....)))).))...((((.(((((.(((((((((((.(..((((...(....)..))))...)))))))))))))))))))))))))))). ( -58.90) >consensus UAGAUUUUGGAGAUCGUCUGAUCGAGGUAAUUGGCCUGGAGAAUUGCCUGCACAUGGGUCAGGUGCGAACUGGUCUGCGCGCCUCCGGACGCCGCUUGGCCCAGUGCAGCGAGGUGAUCA ...........((((((((..((.((((.....)))).)).......((((((.(((((((((((((..(.(((......)))...)..)).)))))))))))))))))..)))))))). (-35.30 = -34.92 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:23 2006