Locus 676

Sequence ID 2R_DroMel_CAF1
Location 3,345,001 – 3,345,112
Length 111
Max. P 0.882034
window1194

overview

Window 4

Location 3,345,001 – 3,345,112
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.81
Mean single sequence MFE -39.04
Consensus MFE -25.32
Energy contribution -28.12
Covariance contribution 2.80
Combinations/Pair 1.15
Mean z-score -2.29
Structure conservation index 0.65
SVM decision value 0.92
SVM RNA-class probability 0.882034
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3345001 111 - 20766785
CUCCGUCAGGCUCCUGUCUGGAGUCGUAGAAGUCCAGGCUGCUCUCAUGCGGUCCAACAGAGGUUCUUCCUGU-CCGGGGCAAGAACUUUAG--------UUGCAUUUCUGCUUGAUUCU
....((((((((((.....))))))((((((((...((((((......))))))((((.((((((((((((..-...))).))))))))).)--------))).)))))))).))))... ( -44.00)
>DroSim_CAF1 17158 111 - 1
CUCCGUCAGGCUCCUGUCUAGAGUCGUAGAAGUCCAGGCUGCUCUCAUGCGGUCCAACAGACGUUCUUCCUAU-CCGGGACAAGAACUUUAG--------UUGCAUUUCUGCUUGAUGCU
...((((((((((.......)))))((((((((...((((((......))))))((((.((.(((((((((..-..))))..))))).)).)--------))).)))))))).))))).. ( -36.90)
>DroEre_CAF1 16715 111 - 1
CUCCGUCAGGCUCCUGUCUGGAGUCGUAGAAGUCCAGGCUGGUCUCAUGUGGACCAACCGAGGUUCUUCCUGU-CCGGGACAAGAACUUAUG--------UUGCAUUUCUGCUUGAUGUU
...(((((((((((.....))))))((((((((.((((.((((((.....)))))).)).(((((((((((..-..))))..)))))))...--------.)).)))))))).))))).. ( -44.60)
>DroYak_CAF1 17343 111 - 1
CUCCGUCAGGCUCCUGCCUGGAAUCGUAGAAGUCCAGGCUGCUCUCAUGCGGACCAACAGAGGUUCUUCCUGU-CCGGAACAAGAACUUAUG--------UUGCAUUUCUGCUUGAUGUA
...(((((((((((.(((((((..........))))))).((......))))).(((((.((((((((((...-..)))...))))))).))--------))).......)))))))).. ( -40.80)
>DroAna_CAF1 16216 119 - 1
CGCCGUCAGGCUCUUGUCUCGAAUCGUAAAAGUCCAGGCUGUUCUCGUGAGGGCCCACAGAGGUUCGACCUGUUCCAGGGAAAUAAUUUUAUUAUGGCUUUUGAAU-UUUGAUAGAAUCU
.(((....)))(((....(((((...((((((((((((.((.(((((((......))).))))..)).))))(((....))).............))))))))...-))))).))).... ( -28.90)
>consensus
CUCCGUCAGGCUCCUGUCUGGAGUCGUAGAAGUCCAGGCUGCUCUCAUGCGGACCAACAGAGGUUCUUCCUGU_CCGGGACAAGAACUUUAG________UUGCAUUUCUGCUUGAUGCU
...(((((((((((.....))))))((((((((.((((((((......)))).))....((((((((((((.....))))..))))))))...........)).)))))))).))))).. (-25.32 = -28.12 +   2.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:22 2006