Locus 671

Sequence ID 2R_DroMel_CAF1
Location 3,320,137 – 3,320,234
Length 97
Max. P 0.912690
window1186

overview

Window 6

Location 3,320,137 – 3,320,234
Length 97
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 83.03
Mean single sequence MFE -24.47
Consensus MFE -21.55
Energy contribution -21.33
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.84
Structure conservation index 0.88
SVM decision value 1.08
SVM RNA-class probability 0.912690
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3320137 97 + 20766785
UCGCGACGAGGAGUCCUGGAAGCGGGAGACAGAGAUAUAUAGGUGAGCAACAGAUUAUUUGUGACUCUGUAAUUUGUAGCUGUAGAAAUUUUUAACU
..((.(((((...(((((....))))).((((((...(((((((((........))))))))).))))))..))))).))................. ( -24.10)
>DroSec_CAF1 1779 78 + 1
UCGCGACGAGGAGUCCUGGAAGCGGGAGACAGAGAUCUACAGGUGAGCA-----UUAUUUGUGACUCUGUAAUUUGU--------------UAAACA
....((((((...(((((....))))).((((((.((.((((((((...-----))))))))))))))))..)))))--------------)..... ( -23.80)
>DroSim_CAF1 1756 83 + 1
UCGCGACGAGGAGUCCUGGAAGCGGGAGACAGAGAUCUACAGGUGAGCACCAGAUUAUUUGUGACUCUGUAAUUUGU--------------UAAACA
....((((((...(((((....))))).((((((.((.((((((((........))))))))))))))))..)))))--------------)..... ( -25.50)
>consensus
UCGCGACGAGGAGUCCUGGAAGCGGGAGACAGAGAUCUACAGGUGAGCA_CAGAUUAUUUGUGACUCUGUAAUUUGU______________UAAACA
.....(((((...(((((....))))).((((((...(((((((((........))))))))).))))))..))))).................... (-21.55 = -21.33 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:14 2006