Locus 670

Sequence ID 2R_DroMel_CAF1
Location 3,318,647 – 3,318,747
Length 100
Max. P 0.731842
window1185

overview

Window 5

Location 3,318,647 – 3,318,747
Length 100
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.23
Mean single sequence MFE -29.80
Consensus MFE -21.87
Energy contribution -22.62
Covariance contribution 0.75
Combinations/Pair 1.11
Mean z-score -1.74
Structure conservation index 0.73
SVM decision value 0.43
SVM RNA-class probability 0.731842
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3318647 100 - 20766785
GUAUACACACACAGA----------ACGGUGGUGUGCGUGGGUAAAUCAUUGAGAAAAUGCACUUAUGCUGCAA-ACGCCCACGACA---------UCCGUUUAUAUAAUACAUUCUGUG
.........((((((----------((((..((((.(((((((...((.....))...(((((....).)))).-..))))))))))---------))))).............)))))) ( -27.71)
>DroSec_CAF1 298 101 - 1
GUAUACACACACGGA----------ACGGUGGUGUGCGUGGGUAAAUCAUUGAGAAAAUGCACUUAUGCUGCAAAACGCCCACGACA---------UCCGUUUAUAUAAUAUUUUCUGUG
.........((((((----------((((..((((.(((((((...((.....))...(((((....).))))....))))))))))---------))))).............)))))) ( -27.01)
>DroSim_CAF1 298 101 - 1
GUAUACACACACGGA----------ACGGUGGUGUGCGUGGGUAAAUCAUUGAGAAAAUGCACUUAUGCUGCAAAACGCCCACGACA---------UCCGUUUAUAUAAUACGUUCUGUG
.........((((((----------((((.(((((.(((((((...((.....))...(((((....).))))....))))))))))---------)))(((.....))).))))))))) ( -32.00)
>DroAna_CAF1 566 117 - 1
GUAUACAUAC--GGAACUCGCGCGUACGGCUGUGUGCGUGGGCAAAUCAUUAAGAAAAUGCACUUAUGCUGCGA-ACGCCCACGACAGCAUUUGAAUCCGUUUAUAUAAUGCGUGCAUUC
..........--.......(((((((..(((((...(((((((...((.....))...(((((....).)))).-..))))))))))))...((((....)))).....))))))).... ( -32.50)
>consensus
GUAUACACACACGGA__________ACGGUGGUGUGCGUGGGUAAAUCAUUGAGAAAAUGCACUUAUGCUGCAA_ACGCCCACGACA_________UCCGUUUAUAUAAUACGUUCUGUG
.........((((((..........((((...(((.(((((((...((.....))...(((((....).))))....))))))))))..........)))).............)))))) (-21.87 = -22.62 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:13 2006