Locus 668

Sequence ID 2R_DroMel_CAF1
Location 3,305,465 – 3,305,564
Length 99
Max. P 0.782102
window1183

overview

Window 3

Location 3,305,465 – 3,305,564
Length 99
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 71.92
Mean single sequence MFE -30.50
Consensus MFE -14.54
Energy contribution -15.18
Covariance contribution 0.64
Combinations/Pair 1.32
Mean z-score -1.82
Structure conservation index 0.48
SVM decision value 0.56
SVM RNA-class probability 0.782102
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3305465 99 + 20766785
ACA--ACAAAUAGCUCUGCGAAAACGAAUCUGAGUUUUGGCGAAAAUGGCAGCCGCAGGAGAGGCAAUCGAUGGAGUCUACUCCGUCCGGCUGGUCAUCGC
...--.......((..(((.(((((........))))).)))...((((((((((..((((((((..((....)))))).))))...))))).))))).)) ( -31.20)
>DroSim_CAF1 4566 99 + 1
ACA--ACAAAUAGCUCCGCGAAAACGAAUCUGGGUUUUGGCGAAAAUGGCAGCCGCAGCAGAGGGAAUCGAUGGAGUCUACUCCGUCCGGCUGGUCAUUGC
...--.......((..(((.(((((........))))).)))..(((((((((((.....((.....))(((((((....)))))))))))).)))))))) ( -33.70)
>DroEre_CAF1 1615 98 + 1
AAA--ACAAAUAACUCUGCCAAAACAAAUCUGU-UCUUGGCCGAAAUGGCAGCCGCAGCUGAUGGAAUCGAUGGAAUCUUCUCCGUCCGGCUGGUCAUCGC
...--.........((.(((((((((....)))-).))))).)).((((((((((((.....)).....((((((......))))))))))).)))))... ( -28.20)
>DroWil_CAF1 4421 82 + 1
ACUUACCAUACAC------CAUGGCGAAU------UGUGGUGCUGGUGGUGGCGGC-------GCCAUCGAUGGCAUCUACUCCAUUCGCCUGGUCAUAGC
...........((------((.(((((((------.((((((((..(((((((...-------)))))))..)))).))))...)))))))))))...... ( -33.50)
>DroYak_CAF1 1591 99 + 1
AAA--ACAAAUAUCUCCGCGAAAACAAAUCUAUGUAUUAUCCGAAAUGGCAGCCGCAGCAGAGGGAAUCGACGGAGUAUACUCCGUCCGCCUCGUCAUCGC
...--............((((..(((......)))...........((((.((....)).((((.....(((((((....)))))))..)))))))))))) ( -25.90)
>consensus
ACA__ACAAAUAGCUCCGCGAAAACGAAUCUGUGUUUUGGCGAAAAUGGCAGCCGCAGCAGAGGGAAUCGAUGGAGUCUACUCCGUCCGGCUGGUCAUCGC
.............................................((((((((((.....((.....))(((((((....)))))))))))).)))))... (-14.54 = -15.18 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:11 2006