Locus 665

Sequence ID 2R_DroMel_CAF1
Location 3,304,049 – 3,304,169
Length 120
Max. P 0.857286
window1176

overview

Window 6

Location 3,304,049 – 3,304,169
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.11
Mean single sequence MFE -50.90
Consensus MFE -44.41
Energy contribution -44.97
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -2.56
Structure conservation index 0.87
SVM decision value 0.81
SVM RNA-class probability 0.857286
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3304049 120 - 20766785
CAAGGCUAAGGUCGAGGAGGCCUCCAAGGGACCCCUGAAGGGAAUCCUGGGCUACACCGAUGAGGAGGUGGUCUCCACCGACUUCUUCAGCGACACCCAUUCGUCUGUGUUCGACGCCAA
...(((...((((.((((..(((...(((....)))...)))..)))).))))((((.((((((..(((((((......))).((......))))))..)))))).)))).....))).. ( -45.80)
>DroEre_CAF1 116 120 - 1
CAAGGCUAAGGUCGAGGAGGCGUCCAAGGGACCCCUGAAGGGAAUCCUGGGCUACACCGACGAGGAGGUUGUCUCCACCGACUUCCUCAGCGAUACCCAUUCGUCGGUCUUCGACGCCAA
...(((....((((((((...(((((.(((..(((....)))..))))))))....(((((((((((((((.......))))))))))...((.......)))))))))))))))))).. ( -53.60)
>DroYak_CAF1 116 120 - 1
CAAGGCUAAGGUCGAGGAGGCCUCCAAGGGACCCCUGAAGGGAAUCCUGGGCUACACCGACGAGGAGGUGGUCUCCACCGACUUCCUCAGCGACACCCAUUCGUCGGUCUUCGACGCCAA
...(((....(((((((((((((...((((..(((....)))..)))))))))...((((((((((((((((....))).))))))))...((.......)))))))))))))))))).. ( -53.30)
>consensus
CAAGGCUAAGGUCGAGGAGGCCUCCAAGGGACCCCUGAAGGGAAUCCUGGGCUACACCGACGAGGAGGUGGUCUCCACCGACUUCCUCAGCGACACCCAUUCGUCGGUCUUCGACGCCAA
...(((....(((((((((((((...((((..(((....)))..)))))))))...((((((((((((..(((......)))..))))...(.....).))))))))))))))))))).. (-44.41 = -44.97 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:05 2006